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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LDVPSSSRYDHRIRYVTYNPADVVQVDTVLGVATHIMLEEGEQYLTHAFGDSEAYAFARKGRHIFIKPQAELANTNLIVV
TDRRSYKFRLQMRNDRNGAMYELAFRYPDTQARQT

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8rt6:B 246 115 1.0000 0.4675 1.0000 2.18e-82 7o3j:B, 7o3j:E, 7o3j:H, 7o3j:K, 7o3j:N, 7o3j:Q, 7o3j:T, 7o3j:W, 7o3j:Z, 7o3j:c, 7o3j:f, 7o3j:i, 7o3j:l, 7o3j:o, 7o3t:B, 7o3t:z, 7o3t:E, 7o3t:H, 7o3t:K, 7o3t:N, 7o3t:Q, 7o3t:T, 7o3t:v, 7o3t:W, 7o3t:Z, 7o3t:c, 7o3t:f, 7o3t:i, 7o3t:l, 7o3t:o, 8rt4:B, 8rt4:E, 8rt4:H, 8rt4:K, 8rt4:N, 8rt4:Q, 8rt4:T, 8rt4:W, 8rt4:Z, 8rt4:c, 8rt4:f, 8rt4:i, 8rt4:l, 8rt4:o, 8rt5:B, 8rt5:z, 8rt5:E, 8rt5:H, 8rt5:K, 8rt5:N, 8rt5:Q, 8rt5:T, 8rt5:v, 8rt5:W, 8rt5:Z, 8rt5:c, 8rt5:f, 8rt5:i, 8rt5:l, 8rt5:o, 8rt6:E, 8rt6:H, 8rt6:K, 8rt6:N, 8rt6:Q, 8rt6:T, 8rt6:W, 8rt6:Z, 8rt6:c, 8rt6:f, 8rt6:i, 8rt6:l, 8rt6:o, 8rt6:v, 8rt6:z, 8rt7:B, 8rt7:E, 8rt7:H, 8rt7:K, 8rt7:N, 8rt7:Q, 8rt7:T, 8rt7:W, 8rt7:Z, 8rt7:c, 8rt7:f, 8rt7:i, 8rt7:l, 8rt7:o, 8rt7:v, 8rt7:z, 8rt8:B, 8rt8:E, 8rt8:H, 8rt8:K, 8rt8:N, 8rt8:Q, 8rt8:T, 8rt8:W, 8rt8:Z, 8rt8:c, 8rt8:f, 8rt8:i, 8rt8:l, 8rt8:o, 8rt8:v, 8rt8:z
2 3tvq:A 152 37 0.1217 0.0921 0.3784 0.94
3 7xt2:B 388 48 0.1391 0.0412 0.3333 4.0 7xt2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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