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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGW
VPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDL
FSLRVRSLELYHQLVALVMAYSFQEPLEEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM
ANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTEEELT
TTLKVLCMPAEEFRELKDQSLTITNIPKLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRY
GQKMILHQLLELTS

The query sequence (length=414) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3qxy:A 420 420 1.0000 0.9857 0.9857 0.0 3qxy:B, 3rc0:A, 3rc0:B
2 6ox1:B 484 403 0.2560 0.2190 0.2630 1.26e-22 6ict:A, 6ict:B, 6ict:C, 6ict:D, 6icv:A, 6icv:B, 6jat:A, 6jat:C, 7lms:A, 6mbj:A, 6mbj:B, 6mbk:A, 6mbk:B, 6mbl:A, 6ox0:A, 6ox0:B, 6ox1:A, 6ox2:A, 6ox2:B, 6ox3:A, 6ox3:B, 6ox4:A, 6ox4:B, 6ox5:A, 3smt:A, 6v62:A, 6v63:A, 6v63:B, 7w28:A, 7w29:A, 6wk1:A, 6wk1:B, 6wk2:A, 6wk2:D, 8x77:B
3 1ozv:B 441 270 0.1498 0.1406 0.2296 4.26e-09 2h21:A, 2h21:B, 2h21:C, 2h23:A, 2h23:B, 2h23:C, 2h2e:A, 2h2e:B, 2h2e:C, 2h2j:A, 2h2j:B, 2h2j:C, 1mlv:A, 1mlv:B, 1mlv:C, 1ozv:A, 1ozv:C, 1p0y:A, 1p0y:B, 1p0y:C
4 8qma:J 426 67 0.0604 0.0587 0.3731 0.78 8r5o:L, 8r6s:L, 8ras:L, 8rdj:L
5 3qe3:A 351 58 0.0362 0.0427 0.2586 3.8
6 2bq4:B 115 19 0.0266 0.0957 0.5789 4.2 2bq4:A
7 5v3h:A 438 100 0.0604 0.0571 0.2500 6.2 5arf:A, 5arg:A, 6cbx:A, 6cbx:B, 6cby:A, 6cby:B, 5kjk:A, 5kjl:A, 5kjm:A, 5kjn:A, 6mon:A, 6mon:B, 6n3g:A, 4o6f:A, 3qwv:A, 3qww:A, 3rib:A, 3rib:B, 3s7b:A, 3s7d:A, 3s7f:A, 3s7j:A, 3tg4:A, 3tg5:A, 5wcg:A, 4wuy:A, 4ynd:A
8 6y48:B 538 40 0.0338 0.0260 0.3500 7.2 6y48:A, 6y48:C, 6y48:D
9 2gge:D 376 78 0.0531 0.0585 0.2821 9.7 2gge:A, 2gge:B, 2gge:C, 2gge:E, 2gge:F, 2gge:G, 2gge:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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