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BioLiP Library
>protein
LDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFDDLQKNSTIFATNDPAGFNIIDVAGWGALGHAVG
FAVLAINSLQG

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zq9:G 95 91 1.0000 0.9579 1.0000 2.58e-62 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
2 7zqc:G 80 91 0.8352 0.9500 0.8352 1.38e-46 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
3 6ijo:G 70 91 0.7363 0.9571 0.7363 1.58e-37 7r3k:G
4 8cmo:G 93 92 0.5604 0.5484 0.5543 1.15e-30
5 6sl5:G 101 96 0.5275 0.4752 0.5000 1.39e-23
6 7yca:G 95 93 0.4725 0.4526 0.4624 3.97e-20
7 7a4p:G 99 92 0.4505 0.4141 0.4457 1.96e-19 6zzx:G, 6zzy:G
8 6l35:G 98 85 0.4615 0.4286 0.4941 7.09e-19 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
9 8bcv:G 94 92 0.4505 0.4362 0.4457 1.72e-18
10 7wg5:AG 99 92 0.4286 0.3939 0.4239 2.41e-18 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
11 8wgh:G 98 92 0.4066 0.3776 0.4022 2.92e-17
12 5zji:G 97 92 0.4176 0.3918 0.4130 8.45e-17
13 3lw5:G 95 88 0.3736 0.3579 0.3864 9.11e-16 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
14 4y28:G 91 87 0.3297 0.3297 0.3448 1.33e-11
15 4rku:G 84 79 0.3077 0.3333 0.3544 3.24e-09
16 8cmo:K 89 81 0.2967 0.3034 0.3333 2.69e-06
17 7dz7:K 86 50 0.2418 0.2558 0.4400 6.65e-06 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
18 7a4p:K 86 34 0.1758 0.1860 0.4706 5.65e-05 6zzx:K, 6zzy:K
19 6igz:K 80 82 0.2747 0.3125 0.3049 4.36e-04
20 8htu:K 81 81 0.2857 0.3210 0.3210 7.10e-04 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
21 8wgh:K 83 81 0.2747 0.3012 0.3086 0.003
22 8j6z:K 84 81 0.2527 0.2738 0.2840 0.014 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
23 8bcv:K 88 81 0.2418 0.2500 0.2716 0.018 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
24 7wfd:AK 65 27 0.1319 0.1846 0.4444 0.056 7wfe:BK, 7wg5:AK, 7wg5:BK
25 8j7a:K 56 25 0.1209 0.1964 0.4400 0.16
26 6sl5:K 84 34 0.1978 0.2143 0.5294 0.24
27 5anr:A 245 59 0.1758 0.0653 0.2712 0.85
28 8wwu:B 492 36 0.1319 0.0244 0.3333 2.1 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
29 7yca:K 87 74 0.2088 0.2184 0.2568 3.3
30 7zm7:A 711 40 0.1429 0.0183 0.3250 4.5 7zmb:A, 7zmg:A
31 7b2e:A 548 19 0.1099 0.0182 0.5263 4.6 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H
32 5kay:A 201 20 0.0989 0.0448 0.4500 8.0 5kay:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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