Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LCTHLSYSRSLSPGKAVFFYKTAESDFVPLRIEVAKISGQKCGYTEGFDANLKPKNIERYELAYSNPQTIEACYVPPNVD
ELYCRFSLRVEANSMRPYVCSNPDVLRVMIGLAQAYQRLGGYNELARRYSANVLRGIWLWRNQYTQGTKIEIKTSLGSTY
HIPDARRLSWSGDWPELEQKQLEQLTSEMAKALSQPDIFWFADVTASLKTGFCQEIFPSQKFTERPDDHSVASRQLATVE
CSDGQLAACINPQKIGAALQKIDDWWANDADLPLRVHEYGANHEALTALRHPATGQDFYHLLTKAEQFVTVLESSEGGGV
ELPGEVHYLMAVLVKGGLFQKG

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7u5d:B 342 342 1.0000 1.0000 1.0000 0.0 7u5d:C, 7u5d:D, 7u5d:E, 7u5d:F, 7u5e:B, 7u5e:C, 7u5e:D, 7u5e:E, 7u5e:F
2 7u5d:G 300 342 0.8772 1.0000 0.8772 0.0 7u5e:G
3 6pij:A 351 349 0.3070 0.2991 0.3009 9.72e-47 8fuk:A, 8fuk:B, 8fuk:C, 8fuk:D, 8fuk:E, 6lnb:G, 6lnb:F, 6lnb:E, 6lnb:D, 6lnb:C, 6lnc:G, 6lnc:F, 6lnc:E, 6lnc:D, 6lnc:C, 6pif:A, 6pif:B, 6pif:C, 6pif:D, 6pif:E, 6pig:A, 6pig:B, 6pig:C, 6pig:D, 6pig:E, 6pij:B, 6pij:C, 6pij:D, 6pij:E, 6uvn:G, 6uvn:F, 6uvn:E, 6uvn:H, 6uvn:D, 6v9q:B, 6v9q:C, 6v9q:D, 6v9q:E, 6v9q:F, 6vbw:B, 6vbw:C, 6vbw:D, 6vbw:F, 6vbw:E
4 6pif:F 310 343 0.2865 0.3161 0.2857 9.89e-42 8fuk:F, 6lnb:B, 6lnc:B, 6pig:F, 6pij:F, 6uvn:C, 6v9q:G, 6vbw:G
5 7elm:E 337 283 0.2485 0.2522 0.3004 1.17e-24 6b44:D, 6b44:E, 6b44:F, 6b44:G, 6b44:H, 6b45:D, 6b45:E, 6b45:F, 6b45:G, 6b45:H, 6b46:D, 6b46:E, 6b46:F, 6b46:G, 6b46:H, 6b47:D, 6b47:E, 6b47:F, 6b47:G, 6b47:H, 6b48:D, 6b48:E, 6b48:F, 6b48:G, 6b48:H, 7ecv:D, 7ecv:E, 7ecv:F, 7ecv:G, 7ecv:H, 7ecw:D, 7ecw:E, 7ecw:F, 7ecw:G, 7ecw:H, 7elm:D, 7elm:F, 7elm:G, 7elm:H, 7elm:N, 7elm:O, 7elm:P, 7elm:Q, 7elm:R, 7eln:D, 7eln:E, 7eln:F, 7eln:G, 7eln:H, 7eln:N, 7eln:O, 7eln:P, 7eln:Q, 7eln:R, 7eqg:E, 7eqg:F, 7eqg:G, 7eqg:H, 7eqg:I, 7jzw:E, 7jzw:F, 7jzw:G, 7jzw:H, 7jzw:I, 7jzx:E, 7jzx:F, 7jzx:G, 7jzx:H, 7jzx:I, 7jzy:E, 7jzy:F, 7jzy:G, 7jzy:H, 7jzy:I, 7jzz:E, 7jzz:F, 7jzz:G, 7jzz:H, 7jzz:I, 6ne0:D, 6ne0:E, 6ne0:F, 6ne0:G, 6ne0:H, 7t3j:E, 7t3j:F, 7t3j:G, 7t3j:H, 7t3j:I, 7t3k:E, 7t3k:F, 7t3k:G, 7t3k:H, 7t3k:I, 7t3k:e, 7t3k:f, 7t3k:g, 7t3k:h, 7t3k:i, 7t3l:E, 7t3l:F, 7t3l:G, 7t3l:H, 7t3l:I, 7t3l:e, 7t3l:f, 7t3l:g, 7t3l:h, 7t3l:i, 7taw:E, 7taw:F, 7taw:G, 7taw:H, 7taw:I, 7taw:e, 7taw:f, 7taw:g, 7taw:h, 7taw:i, 7tax:E, 7tax:F, 7tax:G, 7tax:H, 7tax:I, 5uz9:D, 5uz9:E, 5uz9:F, 5uz9:G, 5uz9:H, 6vqv:F, 6vqv:G, 6vqv:H, 6vqv:I, 6vqv:J, 6vqw:E, 6vqw:F, 6vqw:G, 6vqw:H, 6vqw:I, 6vqx:E, 6vqx:F, 6vqx:G, 6vqx:H, 6vqx:I, 6w1x:D, 6w1x:E, 6w1x:F, 6w1x:G, 6w1x:H, 7we6:D, 7we6:E, 7we6:F, 7we6:G, 7we6:H, 7we6:N, 7we6:O, 7we6:P, 7we6:Q, 7we6:R, 6whi:D, 6whi:E, 6whi:F, 6whi:G, 6whi:H, 5xlo:B, 5xlo:C, 5xlo:D, 5xlo:E, 5xlo:F, 5xlp:D, 5xlp:E, 5xlp:F, 7yhs:D, 7yhs:F, 7yhs:G, 7yhs:H, 7yhs:I
6 7eqg:D 309 281 0.2456 0.2718 0.2989 2.29e-24 6b44:C, 6b45:C, 6b46:C, 6b47:C, 6b48:C, 7ecv:C, 7ecw:C, 7elm:C, 7elm:M, 7eln:C, 7eln:M, 7jzw:D, 7jzx:D, 7jzy:D, 7jzz:D, 6ne0:C, 7t3j:D, 7t3k:D, 7t3k:d, 7t3l:D, 7t3l:d, 7taw:D, 7taw:d, 7tax:D, 5uz9:C, 6vqw:D, 6vqx:D, 6w1x:C, 7we6:C, 7we6:M, 6whi:C, 5xlo:A, 5xlp:C, 7yhs:C
7 8w1p:A 325 348 0.2661 0.2800 0.2615 2.85e-21 8w1p:B, 8w1p:C, 8w1p:D, 8w1p:E, 8ydb:I, 8ydb:H, 8ydb:G, 8ydb:F, 8ydb:E, 8yeo:I, 8yeo:E, 8yeo:F, 8yeo:G, 8yeo:H, 8yh9:H, 8yh9:G, 8yh9:E, 8yh9:D
8 6vqv:E 285 279 0.2339 0.2807 0.2867 2.50e-20
9 8yh9:I 302 277 0.2135 0.2417 0.2635 2.83e-18 8w1p:F, 8ydb:D, 8yeo:D, 8yh9:F
10 8k0k:C 304 346 0.2339 0.2632 0.2312 4.77e-12 8k0k:D, 8k0k:E, 8k0k:F, 8k0k:G, 8k0k:H, 8k22:G, 8k22:I, 8k22:J, 8k22:K, 8k22:L, 8k22:M, 8k23:G, 8k23:I, 8k23:J, 8k23:K, 8k23:L, 8k23:M, 8k23:g, 8k23:i, 8k23:j, 8k23:k, 8k23:l, 8k23:m, 8k24:g, 8k24:i, 8k24:j, 8k24:k, 8k24:l, 8k24:m, 8k24:G, 8k24:I, 8k24:J, 8k24:K, 8k24:L, 8k24:M, 8k27:D, 8k27:C, 8k27:G, 8k27:F, 8k27:E, 8k27:H, 8k28:C, 8k28:D, 8k28:E, 8k28:F, 8k28:G, 8k28:H, 8k29:C, 8k29:D, 8k29:E, 8k29:F, 8k29:G, 8k29:H, 7wwu:C, 7wwu:D, 7wwu:E, 7wwu:F, 7wwu:G, 7wwu:H, 7wwv:C, 7wwv:D, 7wwv:E, 7wwv:F, 7wwv:G, 7wwv:H
11 6u3j:A 876 34 0.0497 0.0194 0.5000 2.8 5rvw:A, 5rvw:B, 5rvx:A, 5rvx:B, 5rvy:A, 5rvy:B, 5rvz:A, 5rvz:B, 5rw0:A, 5rw0:B, 5rw1:A, 5rw1:B, 6sy1:A, 6sy1:B, 6u3j:B
12 4eyw:B 634 52 0.0585 0.0315 0.3846 5.5 2deb:A, 2deb:B, 4ep9:A, 4eph:A, 4eyw:A, 2fw3:A, 2rcu:A, 2rcu:B
13 5tx3:A 306 35 0.0468 0.0523 0.4571 6.3 5tx3:B
14 4d2w:D 326 35 0.0468 0.0491 0.4571 6.6 4bky:A, 4bkz:A, 4bl1:A, 4d2p:A, 4d2p:B, 4d2p:C, 4d2p:D, 4d2t:A, 4d2t:B, 4d2t:C, 4d2t:D, 4d2v:A, 4d2v:B, 4d2v:C, 4d2v:D, 4d2w:A, 4d2w:B, 4d2w:C, 6gvx:A, 6gvx:B, 5ih8:A, 5ih9:A, 5iha:A, 5ihc:A, 5k00:A, 5m5a:A, 5maf:A, 5mag:A, 5mah:A, 5mai:A, 5tvt:A, 5twl:A, 5twy:A, 5twy:B, 5twz:A, 4ump:A, 4ump:B, 4ump:C, 4ump:D, 4umq:A, 4umr:A, 4umt:A, 4umu:A, 6vxr:A
15 7fap:A 1236 40 0.0292 0.0081 0.2500 6.7
16 7jgh:A 1421 40 0.0292 0.0070 0.2500 7.4
17 3l2n:A 376 52 0.0526 0.0479 0.3462 8.4 3l2n:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218