Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LASMWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVA
HFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETP
FLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGK
YPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDDYSTQELGKT
IVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFD
LVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLA
NGGDGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFSHH

The query sequence (length=529) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jv8:C 529 529 1.0000 1.0000 1.0000 0.0 7bbj:A, 7bbj:B, 4h1s:A, 4h1s:B, 4h1y:P, 4h2b:A, 4h2f:A, 4h2g:A, 4h2i:A, 6hxw:A, 6hxw:B, 7jv8:A, 7jv8:B, 7jv8:D, 7jv9:A, 7jv9:B, 7p9n:A, 7p9r:A, 7p9t:A, 7pa4:A, 7pb5:A, 7pba:A, 7pbb:A, 7pby:A, 7pcp:A, 7pd9:A, 7qga:A, 7qgl:A, 7qgm:A, 7qgo:A, 6s7f:A, 6s7h:A, 6tve:P, 6tvg:A, 6tvx:A, 6tw0:A, 6twa:A, 6twf:A, 6vc9:A, 6xue:A, 6xue:B, 6xug:A, 6xug:B, 6xuq:A, 6ye1:A, 6ye1:B, 6ye2:A, 6ye2:B, 6z9b:A, 6z9d:A
2 5h7w:B 529 524 0.6843 0.6843 0.6908 0.0 7d0v:A, 7d0v:B, 5h7w:A
3 2z1a:A 507 524 0.3819 0.3984 0.3855 1.36e-103
4 3ztv:A 565 529 0.2987 0.2796 0.2987 3.22e-49 3zu0:A
5 3zu0:B 505 506 0.2779 0.2911 0.2905 1.82e-45
6 3ivd:A 499 515 0.2533 0.2685 0.2602 2.64e-33 3ivd:B, 3ive:A
7 1ho5:A 525 545 0.2590 0.2610 0.2514 1.87e-28 1ho5:B, 1hp1:A, 1hpu:A, 1hpu:B, 1hpu:C, 1hpu:D, 1oi8:A, 1oi8:B, 1ush:A, 2ush:A, 2ush:B, 4wwl:A
8 3gve:A 334 329 0.1777 0.2814 0.2857 9.09e-24 3gve:B
9 4q7f:A 510 479 0.1966 0.2039 0.2171 1.95e-13 3qfk:A
10 5eqv:A 336 296 0.1456 0.2292 0.2601 1.79e-10
11 3jyf:A 336 304 0.1380 0.2173 0.2401 2.26e-10 3jyf:B
12 4uwq:A 548 206 0.1021 0.0985 0.2621 7.11e-09 4uwq:D, 4uwq:G, 4uwq:J, 2wdc:A, 2wdd:A, 2wde:A, 2wdf:A
13 6g90:T 462 81 0.0340 0.0390 0.2222 1.2 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
14 5cot:A 340 85 0.0510 0.0794 0.3176 1.5 5cou:A, 6vt1:A, 6vt1:B, 6vt1:C, 6vt1:D, 6vt6:A, 6vt8:A, 6vt9:A, 6vtb:A, 6vtd:A, 6vte:A, 6vtf:A, 6vtf:B, 6vtf:C, 6vtf:D
15 2okx:A 954 65 0.0378 0.0210 0.3077 4.4 2okx:B
16 6tj7:A 134 20 0.0208 0.0821 0.5500 5.0
17 6clx:B 342 96 0.0491 0.0760 0.2708 5.9 6clx:A
18 8aaf:a 848 45 0.0208 0.0130 0.2444 6.9 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
19 7eap:A 755 67 0.0359 0.0252 0.2836 7.9 5yot:A, 5yot:B, 5yqs:A, 5yqs:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218