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BioLiP
>protein
LARLGRALADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV
QVVLAVDTDQPCVAER

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jsc:B 97 96 1.0000 0.9897 1.0000 4.23e-64 2jsc:A
2 6cdb:A 97 81 0.2708 0.2680 0.3210 1.67e-08 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
3 4omy:A 97 76 0.2604 0.2577 0.3289 3.94e-07 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
4 1u2w:B 107 81 0.2708 0.2430 0.3210 2.93e-05 1u2w:A, 1u2w:C
5 1r23:A 104 72 0.3021 0.2788 0.4028 1.21e-04 1r22:A, 1r22:B, 1r23:B
6 6o8m:A 95 69 0.2500 0.2526 0.3478 7.59e-04
7 3hth:B 173 19 0.1250 0.0694 0.6316 0.59 3hth:A, 3hti:A, 3htj:A, 3htj:B
8 9iuk:A 1335 76 0.2188 0.0157 0.2763 1.1 9iul:A, 9ium:A
9 4by9:E 227 80 0.2188 0.0925 0.2625 2.1 4by9:K, 3nmu:F, 3nmu:J, 3nvk:I, 3nvk:J
10 6vtv:B 252 47 0.1771 0.0675 0.3617 2.5 6vtv:A
11 1u2w:D 94 53 0.1875 0.1915 0.3396 2.8
12 5wph:A 179 30 0.1458 0.0782 0.4667 7.2 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
13 1un9:A 537 38 0.1458 0.0261 0.3684 9.3 1un9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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