Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LANGTVMSGSHWGVFTATVENGRATAFTPWEKDPHPSPMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFV
RVSWDQALDLVAAEVKRVEETYGPEGVFGGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL
EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQT
DVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGW
SMQRMHHGEQAHWMLVTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGGASVIPVARVVDMLENPGAEFD
FNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTG
ILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTD
GADFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNRLHSQLNG
TVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYG
DVNVLSADIGTSKLAQGNCGQTVLAEVEKYTGPAVTLTGFVAPKAAE

The query sequence (length=767) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dmr:A 779 779 0.9987 0.9833 0.9833 0.0 1dms:A, 2dmr:A, 3dmr:A, 4dmr:A, 1e18:A, 1e5v:A, 1e5v:C, 1e60:A, 1e60:C, 1e61:A, 1e61:C, 1h5n:A, 1h5n:C
2 1eu1:A 767 767 0.7744 0.7744 0.7744 0.0
3 7l5s:A 771 767 0.5176 0.5149 0.5176 0.0 7l5i:A
4 1tmo:A 794 791 0.4694 0.4534 0.4551 0.0
5 4v4c:A 875 853 0.3312 0.2903 0.2978 1.11e-74 4v4c:C, 4v4c:E, 4v4c:G, 4v4c:I, 4v4c:K, 4v4c:M, 4v4c:O, 4v4c:Q, 4v4c:S, 4v4c:U, 4v4c:W, 4v4d:A, 4v4d:C, 4v4d:E, 4v4d:G, 4v4d:I, 4v4d:K, 4v4d:M, 4v4d:O, 4v4d:Q, 4v4d:S, 4v4d:U, 4v4d:W, 4v4e:A, 4v4e:C, 4v4e:E, 4v4e:G, 4v4e:I, 4v4e:K, 4v4e:M, 4v4e:O, 4v4e:Q, 4v4e:S, 4v4e:U, 4v4e:W
6 1fdi:A 715 674 0.2164 0.2322 0.2463 2.11e-40 1aa6:A, 1fdo:A, 2iv2:X, 7z0t:A
7 7vw6:A 913 689 0.2190 0.1840 0.2438 1.16e-31 7e5z:A, 8j83:A, 7xqw:A
8 2e7z:A 727 718 0.2425 0.2558 0.2591 2.76e-29
9 7bkb:D 549 530 0.1591 0.2222 0.2302 1.93e-28 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
10 2vpw:A 734 742 0.2373 0.2480 0.2453 1.63e-27 2vpw:E, 2vpx:A, 2vpx:E, 2vpy:A, 2vpy:E, 2vpz:A, 2vpz:E
11 7qv7:S 571 485 0.1538 0.2067 0.2433 1.86e-25 7qv7:Y
12 6tg9:A 949 677 0.2177 0.1760 0.2467 1.10e-23 6tg9:E, 6tga:A, 6tga:E
13 2v45:A 723 743 0.2334 0.2476 0.2409 6.51e-18 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
14 3ml1:A 799 795 0.2308 0.2215 0.2226 2.82e-16 3o5a:A
15 5chc:A 895 352 0.1108 0.0950 0.2415 2.16e-15 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
16 5chc:A 895 217 0.0717 0.0615 0.2535 5.32e-10 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
17 1ogy:A 789 770 0.2295 0.2231 0.2286 7.81e-14 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
18 6cz7:A 814 286 0.0847 0.0799 0.2273 5.72e-10 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
19 2nya:A 791 743 0.1982 0.1922 0.2046 1.63e-09 2nya:F
20 2ivf:A 912 384 0.1160 0.0976 0.2318 7.38e-09
21 2ivf:A 912 296 0.0939 0.0789 0.2432 4.29e-07
22 3egw:A 1244 266 0.0834 0.0514 0.2406 1.51e-08 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
23 3egw:A 1244 74 0.0326 0.0201 0.3378 1.77e-06 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
24 3egw:A 1244 126 0.0456 0.0281 0.2778 0.010 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
25 8cff:A 823 285 0.0821 0.0765 0.2211 0.004 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
26 8cff:A 823 109 0.0365 0.0340 0.2569 0.62 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
27 1h0h:A 977 99 0.0339 0.0266 0.2626 0.013 1h0h:K
28 7b04:B 1120 73 0.0261 0.0179 0.2740 0.016 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
29 7b04:B 1120 74 0.0287 0.0196 0.2973 0.021 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
30 7b04:B 1120 58 0.0222 0.0152 0.2931 0.39 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
31 4aay:A 843 529 0.1643 0.1495 0.2382 0.047 4aay:C, 4aay:E, 4aay:G, 8ccq:A, 8ccq:C, 8ccq:E, 8ccq:G, 8ed4:A, 8ed4:C, 8ed4:E, 8ed4:G, 5nqd:A, 5nqd:C, 5nqd:E, 5nqd:G
32 7w5m:A 227 68 0.0313 0.1057 0.3529 0.12
33 8oh5:C 1172 104 0.0378 0.0247 0.2788 0.14 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
34 1kqf:A 982 440 0.1239 0.0967 0.2159 0.19 1kqg:A
35 5t5i:J 431 198 0.0587 0.1044 0.2273 0.34 5t5i:B, 5t5m:B, 5t61:B, 5t61:H, 5t61:N, 5t61:T, 5t61:Z, 5t61:f, 5t61:l, 5t61:r
36 6l7o:A 371 118 0.0404 0.0836 0.2627 0.48 6l7p:A
37 3pjg:A 389 67 0.0300 0.0591 0.3433 0.93 3pln:A, 3plr:A
38 6jiy:A 3521 36 0.0209 0.0045 0.4444 5.7 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
39 6jrs:A 3488 36 0.0209 0.0046 0.4444 5.8 6jrs:D, 6jrs:G, 6jrs:J
40 7ypn:D 455 115 0.0430 0.0725 0.2870 6.5 7ypm:A, 7ypm:B, 7ypm:D, 7ypm:C, 7ypn:B
41 8dfv:A 1664 75 0.0248 0.0114 0.2533 9.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218