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BioLiP
>protein
LAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLAAA
PWWLPVKGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHY
ANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMSH
RSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8aru:A 278 275 0.9927 0.9784 0.9891 0.0 2aft:X, 2afy:X, 2aii:X, 2aij:X, 2aik:X, 2hi8:X, 2hib:X, 5ssx:A, 5ssy:A, 5ssz:A, 1y1e:X, 1y1f:X, 1y1g:X, 1y1i:X, 1y1j:X, 1z70:X
2 6s07:A 303 282 0.5985 0.5413 0.5816 4.32e-116 5nxl:A, 5nyy:A, 6xtl:A, 6xtm:A, 6xtn:A, 6xto:A, 6xtp:A, 6xtq:A, 6xtr:A, 6xts:A
3 6muj:B 294 279 0.5401 0.5034 0.5305 3.37e-100 6muj:A, 6muj:C, 6muj:D, 6muj:E, 2q17:A, 2q17:B, 2q17:C, 2q17:D, 2q17:E
4 1y4j:B 268 283 0.4818 0.4925 0.4664 6.50e-83 1y4j:A
5 7msy:A 292 293 0.3650 0.3425 0.3413 7.62e-40 6vqp:A
6 5hha:B 272 219 0.2409 0.2426 0.3014 1.14e-20 5hha:A
7 8u41:B 451 297 0.2920 0.1774 0.2694 2.67e-17 8u41:A, 8u42:A, 8u42:B, 8ux5:A, 8ux5:B
8 2y3c:A 278 160 0.2044 0.2014 0.3500 9.92e-15
9 4x8b:A 428 251 0.2810 0.1799 0.3068 1.24e-14 4x8b:B, 4x8d:A, 4x8d:B, 4x8e:A, 4x8e:B
10 7spq:A 316 262 0.2737 0.2373 0.2863 4.85e-14
11 8vil:B 424 210 0.2226 0.1439 0.2905 1.83e-10 8vik:B
12 8vii:A 449 209 0.2153 0.1314 0.2823 3.05e-10 8vih:A, 8vih:B, 8vii:B, 8vik:A, 8vil:A
13 8ryz:A 405 138 0.1679 0.1136 0.3333 9.57e-10 8k5i:A, 8k5j:A, 8k5k:A
14 6qkj:A 417 134 0.1569 0.1031 0.3209 3.20e-08 6o6l:A, 6o6l:B, 6o6l:C, 6o6l:D, 6o6m:A, 6o6m:B, 6o6m:C, 6o6m:D, 8qf6:A, 8qf6:B, 8qf6:C, 8qf6:D, 6qki:A, 6qki:B, 6qki:C, 6qki:D, 6qkj:B
15 8khq:A 700 261 0.2226 0.0871 0.2337 2.21e-06 8khq:B, 8khq:C, 8khq:D
16 8vig:A 436 214 0.1971 0.1239 0.2523 4.98e-04
17 7olc:LI 217 52 0.0657 0.0829 0.3462 7.1 7old:LI, 8oo0:LI, 7z3n:LI, 7z3o:LI

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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