Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LAGVEARKQVSKHWGSLDAATQTSVKQSLLNSAFNEGKDAVRHANARVIASIGSEELDEKKWPELIPNLLQAACDSNPKI
RETAIFIILSLLESFNANLALHIDDFLNLFAQTINDSASLETRSLSAQALSYVSSLIEEEGEINPQYAAKFASLIPSVVQ
VLDATIREGDTTNTKLIFNCLNDFLLLDSQLTGNTIADLVKLALQIAVNSDVDEDIRVFAVQFVTSALVYRKSKINQAKL
GPEITLAALKVASEEIDVEDELTNEEENTPALTALRLISNASGELSPSQVGVPIIEHLPTMLSSSNPFERRSILLAISVL
VTGSPDYTLSQFDKIIPATVTGLKDSEAVVQLAALKCIVQLSTNLQDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLAL
DGLLEFIAHNDIIKYLDPLMNKLFQMLETQQSPKLRAAIVSAIGSCAFAAGSGFVPYFKTSVQYLQQFIQNVSQIEGLSE
DDIELKALTFENISTMGRAVKSAAFAEYAEPLVNAAYEAIKTDSARLRESGYAFIANMAKVYGKDFAPFLQTIIPEIFKT
LEQEEYTVNTGIAYEKEVAAAALSELAIASKEHFLEYVEPSLKVLAEQVNESYGLKETALHSMWAIVKAVLLTANLKEGE
YPKGVPSGSYVDASALAVIQTVREVSLNNVIEEVETSMVISVFQDLSEMLRLFGPIIIMDNGDSTHLDQLCREALSVLKG
EHACQTIEDLDASETEATLLDVALDIYVALSTNLVGGFAQVFTTAKPVILQLCQSKSKNKRSFAVGALSEIALGMRDENP
FIQELLEALIISLTNDKSLEVRCNASYGVGLLIEYSSFDVSAIYSPVLKSLYEILSVADEKNLDEATKEIVDRTFSNVCG
CVARMILKHQNLVPLEHTIPALLSHLPFNTAFEEYDPIFKLFLKLFQEQNSTIINEAPKVIAIFATVFEKESERIELETN
STLGREEKRKQFQSEEIKQQVIELLKHLNQQFVAQNPVLAQVI

The query sequence (length=1003) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ve8:B 1030 1012 0.9980 0.9718 0.9891 0.0 5ve8:A, 5w0v:A, 5w0v:B
2 6xu2:A 1091 1004 0.2134 0.1962 0.2131 3.48e-29 6xte:A
3 3w3w:A 1028 570 0.1336 0.1304 0.2351 5.16e-17 5h2v:A, 3w3x:A, 3w3y:A, 4zj7:A
4 5xbk:B 373 287 0.0798 0.2145 0.2787 1.89e-13
5 5owu:A 860 140 0.0349 0.0407 0.2500 4.78e-04
6 5owu:A 860 611 0.1196 0.1395 0.1964 0.076
7 8sgh:A 844 342 0.0658 0.0782 0.1930 0.014 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
8 8sgh:A 844 334 0.0638 0.0758 0.1916 0.050 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
9 8sgh:A 844 48 0.0209 0.0249 0.4375 0.23 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
10 2q5d:B 845 72 0.0209 0.0249 0.2917 0.022
11 3lww:C 871 72 0.0209 0.0241 0.2917 0.023 1f59:A, 1f59:B, 1m5n:S, 1o6o:A, 1o6o:C, 1o6o:B, 1o6p:B, 1o6p:A, 1qgr:A
12 5yvg:A 830 334 0.0638 0.0771 0.1916 0.057 2h4m:B, 2ot8:B, 5yvh:A
13 5yvg:A 830 329 0.0598 0.0723 0.1824 0.16 2h4m:B, 2ot8:B, 5yvh:A
14 5yvg:A 830 48 0.0209 0.0253 0.4375 0.22 2h4m:B, 2ot8:B, 5yvh:A
15 5yvg:B 764 318 0.0628 0.0825 0.1981 0.16
16 5yvg:B 764 334 0.0648 0.0851 0.1946 0.27
17 6sl5:K 84 26 0.0130 0.1548 0.5000 0.64
18 8xkf:C 377 99 0.0239 0.0637 0.2424 3.7 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
19 6nts:A 583 109 0.0289 0.0497 0.2661 4.5 6iur:F, 8twe:A
20 5yu6:C 1073 24 0.0120 0.0112 0.5000 4.8 3a6p:A, 3a6p:F, 5yu6:A
21 6zwm:B 2185 93 0.0229 0.0105 0.2473 6.9 6zwm:A
22 8rch:A 2036 93 0.0229 0.0113 0.2473 7.2 8rch:B, 8rck:B, 8rcn:B
23 6bcu:A 2204 93 0.0229 0.0104 0.2473 7.3 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
24 6sna:A 265 32 0.0100 0.0377 0.3125 9.2 6sna:B, 6sna:F, 6sna:G, 6sna:J, 6sna:K, 6sna:N, 6sna:X

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218