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BioLiP
>protein
LAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGA
EWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLK
ALSKQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gxg:A 209 206 1.0000 0.9809 0.9951 3.20e-153 2bv7:A, 2euk:A, 2eum:A, 2evd:A, 2evl:A, 2evs:A, 2evs:E, 4gh0:A, 4ghp:A, 4ghs:A, 4ghs:B, 4gix:A, 4gjq:A, 4gjq:B, 4gvt:A, 4gxd:A, 4gxg:B, 4gxg:D, 4gxg:E, 4h2z:A, 3ric:A, 3rzn:A, 3s0i:A, 3s0k:A, 1sx6:A
2 5kdi:A 211 152 0.3171 0.3081 0.4276 1.77e-32 5kdi:B
3 4nti:A 202 166 0.2098 0.2129 0.2590 7.38e-09 4nt2:A, 4ntg:A, 4ntg:B, 4nti:B, 4nto:A, 4nto:B, 4nto:C
4 4kbr:B 207 150 0.1854 0.1836 0.2533 4.93e-07 4kbr:A, 4kbr:C, 4kbr:D, 4kbr:F, 4kbr:G, 4kbr:H
5 4k80:A 209 162 0.1756 0.1722 0.2222 3.12e-05 4k84:A, 4k84:B, 4k85:A, 4k85:B, 4k85:C, 4k85:D, 4k8n:A, 4k8n:E, 4k8n:B, 4k8n:C, 4k8n:D, 4k8n:F, 4kf6:A, 4kf6:B, 4kf6:C, 4kf6:D, 4kf6:E, 4kf6:F
6 8bja:A 1563 144 0.1659 0.0218 0.2361 0.19
7 8d4x:B 1669 143 0.1610 0.0198 0.2308 0.56 8c06:A, 8c06:D
8 8e0q:A 1689 143 0.1610 0.0195 0.2308 0.58 8d4x:A, 8e0q:B
9 8ewi:A 1775 143 0.1610 0.0186 0.2308 0.69 8ewi:B, 8ewi:C, 8ewi:D
10 8p82:A 1596 149 0.1659 0.0213 0.2282 0.74 8p82:B
11 6s83:A 400 47 0.0780 0.0400 0.3404 1.3 6s83:B, 6s83:C, 6s83:D, 6s83:E, 6s83:F, 6s83:G, 6s83:H
12 5lqw:F 218 31 0.0537 0.0505 0.3548 3.9
13 6tmf:X 97 32 0.0585 0.1237 0.3750 8.4
14 8bja:B 1638 91 0.1220 0.0153 0.2747 8.5
15 4a7x:C 234 61 0.0829 0.0726 0.2787 8.9 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E
16 6dbi:C 622 37 0.0439 0.0145 0.2432 9.4 6dbi:A, 6dbj:A, 6dbj:C, 6dbl:A, 6dbl:C, 6dbo:A, 6dbo:C, 6dbq:A, 6dbq:C, 6dbr:A, 6dbr:C, 6dbt:A, 6dbt:C, 6dbu:A, 6dbu:C, 6dbv:A, 6dbv:C, 6dbw:A, 6dbw:C, 6dbx:A, 6dbx:C, 3jbw:A, 3jbw:C, 3jbx:A, 3jbx:C, 3jby:A, 3jby:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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