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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KYRFIDVQPLTGVLGAEITGVDLREPLDDSTWNEILDAFHTYQVIYFPGQAITNEQHIAFSRRFGPVDPVPILKSIEGYP
EVQMIRREANESSRYIGDDWHADSTFLDAPPAAVVMRAIEVPEYGGDTGFLSMYSAWETLSPTMQATIEGLNVVHSATKV
FGSLYQATNWRFSNTSVKVMDVDAGDRETVHPLVVTHPVTGRRALYCNQVYCQKIQGMTDAESKSLLQFLYEHATQFDFT
CRVRWKKDQVLVWDNLCTMHRAVPDYAGKFRYLTRTTVAGDKPSR

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d3h:M 287 285 0.9895 0.9826 0.9895 0.0 6d3i:A
2 5bk9:A 289 285 0.9018 0.8893 0.9018 0.0 5bk9:B, 5bkb:A, 5bkb:B, 5bkc:A, 5bkd:A, 5bkd:B, 6d0o:A, 6d0o:C, 6d0o:D, 6d3h:A, 6d3h:B, 6d3h:I, 6d3i:G, 6d3i:D, 6d3i:J, 6d3m:A, 6d3m:B, 6d3m:F, 6d3m:J
3 5bkc:B 264 284 0.8386 0.9053 0.8415 2.53e-180
4 6d3j:A 247 285 0.8561 0.9879 0.8561 8.58e-179
5 6d0o:B 267 285 0.7789 0.8315 0.7789 3.28e-165
6 6edh:A 281 280 0.3333 0.3381 0.3393 1.77e-55 6edh:B, 1gqw:A, 1gqw:B, 1gy9:A, 1gy9:B, 1os7:A, 1os7:B, 1os7:C, 1os7:D
7 3v17:A 276 284 0.3439 0.3551 0.3451 2.94e-52 3v17:C, 3v17:B, 3v17:D
8 7qte:B 284 280 0.3544 0.3556 0.3607 2.74e-51 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
9 5keu:B 280 282 0.3684 0.3750 0.3723 5.67e-51 5keu:A
10 5vn6:A 273 288 0.3228 0.3370 0.3194 2.18e-40 5vn6:B
11 1vz4:D 259 280 0.3123 0.3436 0.3179 5.86e-38 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
12 1oij:C 238 279 0.3018 0.3613 0.3082 1.54e-36 1oii:C, 1oij:D
13 4j5i:B 285 282 0.3088 0.3088 0.3121 5.76e-34 4j5i:C, 4j5i:G
14 4y0e:H 308 282 0.3018 0.2792 0.3050 9.88e-34 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
15 5bke:E 255 281 0.3088 0.3451 0.3132 9.57e-33 5bke:F, 5bke:G
16 5j92:B 259 282 0.2947 0.3243 0.2979 4.45e-31 5j92:A, 5j92:C, 5j92:D
17 4j5i:E 250 280 0.2667 0.3040 0.2714 2.87e-30 4j5i:A, 4j5i:D, 4j5i:F, 4j5i:H
18 5bke:C 289 296 0.3123 0.3080 0.3007 4.43e-30 5bke:A, 5bke:B, 5bke:D
19 8evo:B 242 280 0.2842 0.3347 0.2893 9.34e-30 4cvy:A, 4cvy:B, 4cvy:C, 4cvy:D
20 3r1j:A 246 280 0.2912 0.3374 0.2964 2.40e-29 3r1j:B
21 3swt:B 246 281 0.2772 0.3211 0.2811 3.32e-29 3swt:A
22 6l86:A 292 265 0.2421 0.2363 0.2604 2.35e-17 6l86:B, 6l86:C, 6l86:D
23 6dch:A 296 275 0.2491 0.2399 0.2582 4.60e-17 6l6w:A, 6l6x:A, 7scp:A, 6xn6:A, 6xo3:A, 6xoj:A, 6xpa:A
24 8kht:B 285 263 0.2386 0.2386 0.2586 9.91e-15 8kht:A
25 8kif:C 286 263 0.2386 0.2378 0.2586 3.43e-14 8kif:B, 8kif:A, 8kif:D
26 5xss:A 274 71 0.0632 0.0657 0.2535 5.4 5xsj:X, 5xss:X, 5xss:B, 5xss:C
27 5jcy:A 371 82 0.0667 0.0512 0.2317 5.9 5jcz:C, 4kp3:A, 4kp3:B, 6ku0:A, 6ku0:C, 4lx2:A
28 4ix7:A 114 45 0.0526 0.1316 0.3333 8.5 4ix7:B
29 2vr0:F 146 61 0.0702 0.1370 0.3279 8.8 2j7a:C, 2j7a:F, 2j7a:I, 2j7a:L, 2j7a:O, 2j7a:R, 2vr0:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218