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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KYHCHNNNKKAYDARQREQTFAKKKLCIASLICFVFISAEIVGGYILAVVTDAAHLLVDLSSFFISLCSLWLSSKSSTTR
LTFGWHRAEILGALMSVITIWLVTGVLVYLACERLIRPDTVMLITSACALGANLVLALILHKPQTNASIRAAFIHVIGDL
FQSISVLISALIIYFKPEYKMADPICTFIFSIFVLITTVTVLRDLLTVLMEGTPRGIHYSDVKQSILAVDGVKSVHSLHL
WALTMNQVILSAHIATDIVGESKRILKDVTQNVFARFPFHSVTIQVEPIEDQSPECMFCY

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y5g:B 302 304 0.9700 0.9636 0.9572 0.0 7y5g:A, 7y5h:B, 7y5h:A
2 6xpd:B 303 305 0.6333 0.6271 0.6230 3.06e-125 6xpd:A, 6xpe:B, 6xpe:A
3 8zsz:A 315 312 0.2800 0.2667 0.2692 4.06e-22 8zsb:A, 8zsb:B, 8zsz:B
4 8j80:B 288 247 0.1800 0.1875 0.2186 9.29e-17 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
5 6vd8:A 85 80 0.0700 0.2471 0.2625 3.53e-07 6vd8:B
6 2qfi:A 286 258 0.1767 0.1853 0.2054 0.082 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
7 8f6k:B 287 95 0.0900 0.0941 0.2842 4.3 8f6e:A, 8f6e:B, 8f6f:A, 8f6f:B, 8f6h:A, 8f6h:B, 8f6i:B, 8f6i:A, 8f6j:B, 8f6j:A, 8f6k:A, 8f6k:C, 8f6k:D, 7kzz:B, 7kzz:A, 5vrf:B, 5vrf:A
8 4yzf:A 475 94 0.0800 0.0505 0.2553 4.6 4yzf:B, 4yzf:C, 4yzf:D
9 3ew9:A 314 76 0.0600 0.0573 0.2368 6.1 3etl:A, 3ewa:A
10 6fyx:D 227 41 0.0433 0.0573 0.3171 6.9 8ccs:g, 8cdl:g, 8cdr:g, 8cf5:g, 8cgn:g, 8cku:g, 6fyy:D, 6gsm:D, 6gsn:D, 8i7j:D, 5it7:D, 5it9:D, 3j80:D, 3j81:D, 3jam:D, 3jap:D, 7osa:uS3, 8rw1:D, 8s8d:D, 8s8e:D, 8s8f:D, 8s8g:D, 8s8h:D, 8s8i:D, 8s8j:D, 6uz7:D, 4v4b:AC, 4v6i:AB, 4v7h:AC, 4v7r:AC, 4v7r:CC
11 8cs9:g 832 58 0.0567 0.0204 0.2931 7.7 8cs9:V, 8cs9:e, 8cs9:Y, 8cs9:f, 8cs9:Z, 8cte:P, 8cte:T, 7v0k:O, 7v0k:P
12 7tvz:A 850 58 0.0567 0.0200 0.2931 8.3 8crq:C, 8crq:E, 8crr:C, 8crr:E, 8crt:C, 8crt:E, 8ct3:C, 8ct3:E, 8t3r:B, 8t44:B, 8t47:B, 8t47:A, 8t6u:A, 8t6u:B, 8t6v:A, 8t6v:B, 7tvz:B, 7ty4:A, 7ty4:B, 7ty6:A, 7ty6:B, 7ty7:A, 7ty7:B, 7ty8:A, 7ty8:B, 7tya:A, 7tya:B, 7uz3:C, 7uz3:E, 7v07:C, 7v07:E, 7v19:C, 7v19:E
13 8t45:A 460 58 0.0567 0.0370 0.2931 8.7 8t3r:A, 8t3u:A, 8t3u:B, 8t44:A, 8t45:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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