Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KYCPKTYTFDDGKVIIKAGARVEEEKVKRLYWASKEVNSQFFRVYGIDKPLEEGNPDDILTMVIYNSPEEYKLNSVLYGY
DTNNGGMYIEPEGTFFTYEREAQESTYTLEELFRHEYTHYLQGRYAVPGQWGRTKLYDNDRLTWYEEGGAELFAGSTRTS
GILPRKSIVSNIHNTTRNNRYKLSDTVHSKYGASFEFYNYACMFMDYMYNKDMGILNKLNDLAKNNDVDGYDNYIRDLSS
NHALNDKYQDHMQERIDNYENLTVPFVADDYLVRHAYKNPNEIYSEISEVAKLKDAKSEVKKSQYFSTFTLRGSYTGGVS
KGKLEDQKAMNKFIDDSLKKLDTYSWSGYKTLTAYFTNYKVDSSNKVTYDVVFHGYLPNEG

The query sequence (length=381) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ar1:A 381 381 1.0000 1.0000 1.0000 0.0 4arf:A, 5o7e:A, 7zoc:A
2 4are:A 678 379 0.5643 0.3171 0.5673 2.19e-148 2y50:A, 2y6i:A, 7z5u:A, 7zbv:A
3 4ar9:A 392 378 0.5249 0.5102 0.5291 1.73e-141 4ar8:A, 4ar8:B, 4ar9:B
4 7wss:A 533 115 0.1102 0.0788 0.3652 7.53e-07 8jt1:A, 8jt1:B, 7wss:B, 7xeb:A, 7xeb:B
5 7esi:A 532 100 0.0866 0.0620 0.3300 4.76e-06 7vlz:A
6 5fog:D 284 178 0.1155 0.1549 0.2472 1.73e-04 5fog:A, 5fog:B, 5fog:C, 5fol:A, 5fom:A
7 3sdi:F 242 70 0.0551 0.0868 0.3000 0.32 3mg6:F, 3mg7:F, 3mg8:F, 3oeu:F, 3oev:F, 3sdi:T, 3sdk:F
8 3gue:A 468 99 0.0551 0.0449 0.2121 4.2 3gue:B
9 6d5f:A 194 39 0.0367 0.0722 0.3590 4.4 6d5f:B, 6d5f:C, 6d5f:D, 6d5f:E, 6d5f:F, 6d5f:G, 6d5f:H, 6d5f:I, 6d5f:J, 6d5f:K, 6d5f:L, 6d5f:M, 6d5f:N, 6d5f:O, 6d5f:P, 6d5f:Q, 6d5f:R, 6d5f:S, 6d5f:T, 6d5f:U, 6d5f:V, 6d5f:W, 6d5f:X, 6d5f:Y, 6d5f:Z
10 6g1o:A 486 57 0.0420 0.0329 0.2807 4.6
11 7at3:A 295 33 0.0394 0.0508 0.4545 5.6 7at3:B, 7at4:A, 7atd:B, 7atf:A, 7atf:B, 7atq:A, 7auy:A, 7av5:AAA, 7av5:BBB, 7nb5:A
12 7auy:B 245 33 0.0394 0.0612 0.4545 5.9
13 7prb:B 438 129 0.0840 0.0731 0.2481 6.5 8ohw:AAA, 8ohw:BBB, 7pr9:A, 7pr9:B, 7prb:A
14 1fio:A 190 52 0.0394 0.0789 0.2885 7.7

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218