Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KWDYDLRCGEYTLNLNEKTLIMGILNVTPGGSYNEVDAAVRHAKEMRDEGAHIIDIGGEVSVEEEIKRVVPMIQAVSKEV
KLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA
GVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVR
VHDVKEMSRMAKMMDAMIGK

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3h2a:B 277 262 1.0000 0.9386 0.9924 0.0 4d8a:A, 4d8a:B, 4d8z:A, 4d8z:B, 4d9p:A, 4d9p:B, 4daf:A, 4daf:B, 4dai:A, 4dai:B, 4db7:A, 4db7:B, 3h21:A, 3h21:B, 3h22:A, 3h22:B, 3h23:A, 3h23:B, 3h24:A, 3h24:B, 3h26:A, 3h26:B, 3h2a:A, 3h2c:A, 3h2c:B, 3h2e:B, 3h2f:A, 3h2f:B, 3h2m:A, 3h2m:B, 3h2n:A, 3h2n:B, 3h2o:A, 3h2o:B, 4nil:A, 4nir:A, 4nir:B, 4nl1:A, 4nl1:B, 1tww:A, 1tww:B, 1twz:A, 1twz:B, 1tx0:A, 1tx0:B, 1tx2:A, 1tx2:B, 3tya:A, 3tya:B, 3tyb:A, 3tyb:B, 3tyc:A, 3tyc:B, 3tyd:A, 3tyd:B, 3tye:A, 3tye:B
2 6pz2:A 263 262 0.4808 0.4753 0.4771 1.31e-81
3 6clv:C 257 251 0.4192 0.4241 0.4343 3.12e-54 1ad4:A, 6clv:A, 6clv:B
4 1aj0:A 282 258 0.3769 0.3475 0.3798 3.48e-53 1aj2:A, 7tq1:A, 7tq1:B, 5u0v:A, 5u0w:A, 5u0w:B, 5u0y:A, 5u0y:B, 5u0z:A, 5u0z:B, 5u10:A, 5u10:B, 5u11:A, 5u11:B, 5u12:A, 5u12:B, 5u13:A, 5u13:B, 5u14:A, 5u14:B, 5v79:A, 5v79:B, 5v7a:A, 5v7a:B
5 3tyz:B 276 255 0.3808 0.3587 0.3882 2.74e-52 5jq9:A, 5jq9:B, 3tyu:A, 3tyz:A, 3tzf:A, 3tzf:B
6 6day:D 273 255 0.3769 0.3590 0.3843 3.70e-50 6day:A, 6day:B, 6day:C, 6ofw:A, 6ofw:B, 6q62:A, 6q62:C, 6q62:D, 6q62:B
7 8d5h:B 274 266 0.3692 0.3504 0.3609 3.97e-46 8d5g:A, 8d5g:B, 8d5h:A, 8d5i:A, 8d5i:B
8 6omz:A 274 263 0.3808 0.3613 0.3764 4.01e-46
9 1eye:A 256 258 0.3692 0.3750 0.3721 1.16e-45
10 3tyu:B 238 235 0.3346 0.3655 0.3702 1.47e-44
11 2dza:B 257 255 0.3654 0.3696 0.3725 2.10e-43 2dzb:A, 2dzb:B
12 5u0v:B 249 240 0.3500 0.3655 0.3792 3.60e-43
13 3tr9:A 277 244 0.3308 0.3105 0.3525 9.35e-42 3tr9:B, 3tr9:C, 3tr9:D
14 8scd:A 264 261 0.3462 0.3409 0.3448 6.87e-38 7s2m:A, 7s2m:B, 7s2m:C
15 2y5s:B 281 262 0.3615 0.3345 0.3588 8.39e-38 2y5s:A
16 2bmb:A 513 316 0.3923 0.1988 0.3228 4.18e-36
17 2vef:A 279 271 0.3808 0.3548 0.3653 5.89e-34 2veg:A
18 6ucz:B 265 254 0.3500 0.3434 0.3583 1.34e-31 6ucz:A
19 7s2i:A 264 243 0.2846 0.2803 0.3045 4.37e-29 7s2i:B
20 6jwz:B 565 263 0.3346 0.1540 0.3308 1.31e-26 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
21 6kcl:B 545 249 0.3269 0.1560 0.3414 2.30e-26 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B
22 7s2k:A 268 217 0.2692 0.2612 0.3226 1.17e-24 7s2k:B
23 6jwq:B 590 283 0.3385 0.1492 0.3110 1.15e-23 6jwq:A, 6jws:A, 6jws:B, 6jwt:A, 6jwt:B, 6jwu:A, 6jwz:A, 6kck:A, 6kck:B, 6kcm:B
24 5z79:B 562 278 0.3154 0.1459 0.2950 2.91e-22
25 5z79:C 599 291 0.3154 0.1369 0.2818 1.22e-20 5z79:A, 5z79:D, 5z79:E, 5z79:F
26 3mcm:A 368 228 0.2538 0.1793 0.2895 1.16e-10 3mcn:A
27 3mco:A 397 238 0.2577 0.1688 0.2815 1.72e-09 3mcn:B, 3mco:B
28 8sl9:A 422 249 0.2654 0.1635 0.2771 2.89e-09 4pzv:A
29 3bof:A 560 201 0.1654 0.0768 0.2139 8.44e-04 3bof:B, 3bol:A, 3bol:B, 1q8j:A, 1q8j:B
30 8g3h:A 841 180 0.1654 0.0511 0.2389 0.28
31 3k13:C 287 212 0.1846 0.1672 0.2264 1.4 3k13:A, 3k13:B
32 3ho8:D 934 72 0.0923 0.0257 0.3333 1.5
33 3bg5:B 1074 72 0.0923 0.0223 0.3333 1.5 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
34 4hnv:B 1033 72 0.0923 0.0232 0.3333 1.6 8gk8:D
35 3bg5:A 1137 72 0.0923 0.0211 0.3333 1.8 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
36 7udj:H 192 98 0.1115 0.1510 0.2959 2.0
37 7xh4:A 177 100 0.1077 0.1582 0.2800 2.1 7xh2:A
38 2yck:X 272 62 0.0538 0.0515 0.2258 2.6 2yci:X, 2ycj:A
39 6z81:A 342 99 0.1115 0.0848 0.2929 2.9 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
40 6vxe:A 789 82 0.1000 0.0330 0.3171 3.6 6vxe:B, 6vxe:C, 6vxe:D, 6vxe:E, 6vxe:F, 6vxe:G, 6vxe:H
41 5voo:A 282 183 0.1577 0.1454 0.2240 5.3 5voo:B, 5voo:C, 5voo:D, 5voo:E, 5voo:F, 5vop:A, 5vop:B
42 8vpo:A 448 37 0.0462 0.0268 0.3243 5.4
43 3vyt:C 336 116 0.1154 0.0893 0.2586 5.9 3vys:C, 3wjp:A, 3wjq:A, 3wjr:A
44 5diy:A 463 72 0.0808 0.0454 0.2917 6.0 5diy:B
45 6vpb:B 324 57 0.0692 0.0556 0.3158 7.3
46 7qty:A 279 17 0.0462 0.0430 0.7059 8.3 7qu0:A
47 6xyw:Bb 281 71 0.0731 0.0676 0.2676 9.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218