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BioLiP
>protein
KWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGKVSVEEEIKRVVPMIQAV
SKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKI
AKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGC
EFVRVHDVKEMSRMAKMMDAMIG

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3h2a:B 277 266 0.9772 0.9278 0.9662 0.0 4d8a:A, 4d8a:B, 4d8z:A, 4d8z:B, 4d9p:A, 4d9p:B, 4daf:A, 4daf:B, 4dai:A, 4dai:B, 4db7:A, 4db7:B, 3h21:A, 3h21:B, 3h22:A, 3h22:B, 3h23:A, 3h23:B, 3h24:A, 3h24:B, 3h26:A, 3h26:B, 3h2a:A, 3h2c:A, 3h2c:B, 3h2e:B, 3h2f:A, 3h2f:B, 3h2m:A, 3h2m:B, 3h2n:A, 3h2n:B, 3h2o:A, 3h2o:B, 4nil:A, 4nir:A, 4nir:B, 4nl1:A, 4nl1:B, 1tww:A, 1tww:B, 1twz:A, 1twz:B, 1tx0:A, 1tx0:B, 1tx2:A, 1tx2:B, 3tya:A, 3tya:B, 3tyb:A, 3tyb:B, 3tyc:A, 3tyc:B, 3tyd:A, 3tyd:B, 3tye:A, 3tye:B
2 6pz2:A 263 259 0.4829 0.4829 0.4903 6.41e-86
3 1aj0:A 282 258 0.3840 0.3582 0.3915 4.42e-58 1aj2:A, 7tq1:A, 7tq1:B, 5u0v:A, 5u0w:A, 5u0w:B, 5u0y:A, 5u0y:B, 5u0z:A, 5u0z:B, 5u10:A, 5u10:B, 5u11:A, 5u11:B, 5u12:A, 5u12:B, 5u13:A, 5u13:B, 5u14:A, 5u14:B, 5v79:A, 5v79:B, 5v7a:A, 5v7a:B
4 3tyz:B 276 255 0.3878 0.3696 0.4000 3.16e-57 5jq9:A, 5jq9:B, 3tyu:A, 3tyz:A, 3tzf:A, 3tzf:B
5 6clv:C 257 256 0.4259 0.4358 0.4375 2.26e-55 1ad4:A, 6clv:A, 6clv:B
6 6day:D 273 255 0.3840 0.3700 0.3961 5.22e-55 6day:A, 6day:B, 6day:C, 6ofw:A, 6ofw:B, 6q62:A, 6q62:C, 6q62:D, 6q62:B
7 6omz:A 274 263 0.3916 0.3759 0.3916 6.14e-52
8 1eye:A 256 257 0.3764 0.3867 0.3852 6.17e-51
9 8d5h:B 274 266 0.3688 0.3540 0.3647 4.00e-49 8d5g:A, 8d5g:B, 8d5h:A, 8d5i:A, 8d5i:B
10 3tyu:B 238 239 0.3308 0.3655 0.3640 6.57e-44
11 5u0v:B 249 245 0.3422 0.3614 0.3673 7.55e-44
12 8scd:A 264 261 0.3574 0.3561 0.3602 1.54e-43 7s2m:A, 7s2m:B, 7s2m:C
13 2dza:B 257 260 0.3612 0.3696 0.3654 2.86e-42 2dzb:A, 2dzb:B
14 2bmb:A 513 316 0.4106 0.2105 0.3418 1.18e-40
15 3tr9:A 277 246 0.3232 0.3069 0.3455 6.62e-40 3tr9:B, 3tr9:C, 3tr9:D
16 6ucz:B 265 254 0.3574 0.3547 0.3701 2.33e-36 6ucz:A
17 2y5s:B 281 267 0.3498 0.3274 0.3446 2.45e-35 2y5s:A
18 7s2i:A 264 243 0.2928 0.2917 0.3169 2.39e-32 7s2i:B
19 2vef:A 279 276 0.3688 0.3477 0.3514 2.65e-31 2veg:A
20 7s2k:A 268 217 0.2852 0.2799 0.3456 1.12e-30 7s2k:B
21 6jwz:B 565 263 0.3460 0.1611 0.3460 3.74e-30 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
22 6jwq:B 590 286 0.3498 0.1559 0.3217 6.76e-27 6jwq:A, 6jws:A, 6jws:B, 6jwt:A, 6jwt:B, 6jwu:A, 6jwz:A, 6kck:A, 6kck:B, 6kcm:B
23 5z79:B 562 281 0.3194 0.1495 0.2989 1.03e-25
24 5z79:C 599 294 0.3194 0.1402 0.2857 4.85e-24 5z79:A, 5z79:D, 5z79:E, 5z79:F
25 6kcl:B 545 253 0.3156 0.1523 0.3281 6.44e-24 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B
26 3mco:A 397 239 0.2662 0.1763 0.2929 1.38e-11 3mcn:B, 3mco:B
27 8sl9:A 422 250 0.2738 0.1706 0.2880 1.89e-11 4pzv:A
28 3ho8:D 934 71 0.0913 0.0257 0.3380 0.14
29 3bg5:B 1074 71 0.0913 0.0223 0.3380 0.15 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
30 3bg5:A 1137 71 0.0913 0.0211 0.3380 0.17 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
31 4hnv:B 1033 71 0.0913 0.0232 0.3380 0.17 8gk8:D
32 8g3h:A 841 180 0.1597 0.0499 0.2333 1.2
33 6vpb:B 324 78 0.0798 0.0648 0.2692 1.6
34 7xh4:A 177 100 0.1065 0.1582 0.2800 1.8 7xh2:A
35 3k13:C 287 188 0.1711 0.1568 0.2394 1.8 3k13:A, 3k13:B
36 7udj:H 192 98 0.1103 0.1510 0.2959 1.8
37 6xyw:Bb 281 102 0.0989 0.0925 0.2549 2.7
38 6vxe:A 789 82 0.0989 0.0330 0.3171 3.5 6vxe:B, 6vxe:C, 6vxe:D, 6vxe:E, 6vxe:F, 6vxe:G, 6vxe:H
39 8vpo:A 448 37 0.0456 0.0268 0.3243 5.4
40 3vti:C 305 92 0.0951 0.0820 0.2717 5.8 3vti:D
41 3vyt:C 336 116 0.1141 0.0893 0.2586 5.8 3vys:C, 3wjp:A, 3wjq:A, 3wjr:A
42 5diy:A 463 67 0.0798 0.0454 0.3134 6.6 5diy:B
43 7qty:A 279 17 0.0456 0.0430 0.7059 8.5 7qu0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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