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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGLQYRVFRVRLPDPNKFGFPDTSFYNPDTQRL
VWACVGLEIGRGQPLGVGVSGHPYLNKFDDTETSNRYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEHWGKGVASNNN
AAATDCPPLELFNSIIEDGDMVDTGFGCMDFGTLQANKSDVPIDICNSTCKYPDYLKMASEPYGDSLFFFLRREQMFVRH
FFNRAGKLGEAVPDDLYIKGSGNTAVIQSSAFFPTPSGSIVTSESQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRS
TNMTLCTEVTKEGTYKNDNFKEYVRHVEEYDLQFVFQLCKITLTAEIMTYIHTMDSNILEDWQFDPLNKYTFWEVNLKEK
FSADLDQFPLGRKFLLQSGL

The query sequence (length=420) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5y9e:E 420 420 1.0000 1.0000 1.0000 0.0 5y9e:A, 5y9e:B, 5y9e:C, 5y9e:D
2 5w1o:A 427 427 0.8071 0.7939 0.7939 0.0 5w1o:C, 5w1o:D
3 5w1x:A 422 422 0.6643 0.6611 0.6611 0.0 5w1x:B, 5w1x:E, 5w1x:F, 5w1x:G, 5w1x:J, 5w1x:L, 5w1x:N
4 1hge:A 328 82 0.0571 0.0732 0.2927 2.0 1hge:C, 1hge:E, 1hgg:A, 1hgg:C, 1hgg:E, 1hgh:A, 1hgh:C, 1hgh:E, 1hgi:A, 1hgi:C, 1hgi:E, 1hgj:A, 1hgj:C, 1hgj:E, 4hmg:A, 4hmg:C, 4hmg:E, 5hmg:A, 5hmg:C, 5hmg:E
5 3u48:B 742 63 0.0429 0.0243 0.2857 2.4 3u48:A, 3u4a:B, 3u4a:A
6 6p9e:A 148 117 0.0667 0.1892 0.2393 2.5
7 6bk8:P 653 90 0.0595 0.0383 0.2778 2.8 6exn:V, 5mq0:V
8 8tj8:A 317 82 0.0548 0.0726 0.2805 4.9
9 6zq4:F 512 80 0.0548 0.0449 0.2875 5.1 6zq4:A, 6zq4:B, 6zq4:C, 6zq4:D, 6zq4:E, 6zq4:G, 6zq4:H, 6zq6:A, 6zq6:B, 6zq6:C, 6zq6:D, 6zq7:A
10 2olg:A 276 52 0.0333 0.0507 0.2692 6.7
11 8fnv:A 770 47 0.0429 0.0234 0.3830 7.7 8fnv:B, 8fnv:C, 8fnv:D, 8fnv:E, 8fnv:F, 8fnv:G, 8fnv:H, 8fnv:I, 8fnv:J, 8fnv:K, 8fnv:L, 8fnw:A, 8fnw:B, 8fnw:C, 8fnw:D, 8fnw:E, 8fnw:F, 8fnw:G, 8fnw:H, 8fnw:I, 8fnw:J, 8fnw:K, 8fnw:L
12 1u8v:A 490 69 0.0476 0.0408 0.2899 9.6 1u8v:B, 1u8v:C, 1u8v:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218