Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGLQYRVFRVRLPDPNKFGFPDTSFYNPDTQRL
VWACVGLEIGRGQPLGVGVSGHPYLNKFDDTETSNRYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEHWGKGVASNAA
ATDCPPLELFNSIIEDGDMVDTGFGCMDFGTLQANKSDVPIDICNSTCKYPDYLKMASEPYGDSLFFFLRREQMFVRHFF
NRAGKLGEAVPDDLYIKGSGNTAVIQSSAFFPTPSGSIVTSESQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTN
MTLCTEVTKEGTYKNDNFKEYVRHVEEYDLQFVFQLCKITLTAEIMTYIHTMDSNILEDWQFDPLNKYTFWEVNLKEKFS
ADLDQFPLGRKFLLQSGL

The query sequence (length=418) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5y9e:E 420 420 1.0000 0.9952 0.9952 0.0 5y9e:A, 5y9e:B, 5y9e:C, 5y9e:D
2 5w1o:A 427 427 0.8086 0.7916 0.7916 0.0 5w1o:C, 5w1o:D
3 5w1x:A 422 422 0.6675 0.6611 0.6611 0.0 5w1x:B, 5w1x:E, 5w1x:F, 5w1x:G, 5w1x:J, 5w1x:L, 5w1x:N
4 6p9e:A 148 117 0.0670 0.1892 0.2393 2.6
5 3u48:B 742 63 0.0431 0.0243 0.2857 2.8 3u48:A, 3u4a:B, 3u4a:A
6 6bk8:P 653 90 0.0598 0.0383 0.2778 2.9 6exn:V, 5mq0:V
7 1hge:A 328 89 0.0550 0.0701 0.2584 4.0 1hge:C, 1hge:E, 1hgg:A, 1hgg:C, 1hgg:E, 1hgh:A, 1hgh:C, 1hgh:E, 1hgi:A, 1hgi:C, 1hgi:E, 1hgj:A, 1hgj:C, 1hgj:E, 4hmg:A, 4hmg:C, 4hmg:E, 5hmg:A, 5hmg:C, 5hmg:E
8 8tj8:A 317 89 0.0526 0.0694 0.2472 4.1
9 6zq4:F 512 80 0.0550 0.0449 0.2875 4.8 6zq4:A, 6zq4:B, 6zq4:C, 6zq4:D, 6zq4:E, 6zq4:G, 6zq4:H, 6zq6:A, 6zq6:B, 6zq6:C, 6zq6:D, 6zq7:A
10 2olg:A 276 52 0.0335 0.0507 0.2692 6.5
11 8fnv:A 770 47 0.0431 0.0234 0.3830 7.5 8fnv:B, 8fnv:C, 8fnv:D, 8fnv:E, 8fnv:F, 8fnv:G, 8fnv:H, 8fnv:I, 8fnv:J, 8fnv:K, 8fnv:L, 8fnw:A, 8fnw:B, 8fnw:C, 8fnw:D, 8fnw:E, 8fnw:F, 8fnw:G, 8fnw:H, 8fnw:I, 8fnw:J, 8fnw:K, 8fnw:L
12 1u8v:A 490 69 0.0478 0.0408 0.2899 9.3 1u8v:B, 1u8v:C, 1u8v:D
13 5xrs:G 321 89 0.0550 0.0717 0.2584 9.8 5xrs:A, 5xrs:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218