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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVVLNINTDNMCNFASYRLMPFSGFIVERIEINDKNWFDMIWNEEYNKMRSQLPDMSHDKIIENIEYLFNIKILSKNRIK
EFWEEFCKGQKAAIKYITQVHRKNPNTGRRNWNPPEGDFTDNEIEKLYETAYNTLLSLIKYDKNKVYNILINFNPKL

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8z99:K 372 172 1.0000 0.4220 0.9128 9.71e-108 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K
2 8z99:H 582 160 0.9618 0.2595 0.9437 2.99e-102 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
3 8yhe:H 524 160 0.9427 0.2824 0.9250 1.08e-99 8yhd:H
4 8z9e:H 553 159 0.9363 0.2658 0.9245 4.16e-99
5 8bw6:A 99 62 0.1083 0.1717 0.2742 0.22
6 3ven:A 571 63 0.1019 0.0280 0.2540 0.68 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A
7 7jsa:J 88 38 0.0828 0.1477 0.3421 0.89 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
8 2fuv:A 545 41 0.0955 0.0275 0.3659 2.7 2fuv:B, 3na5:A, 3na5:B, 3olp:A, 3olp:B
9 7sa4:8 203 33 0.0892 0.0690 0.4242 5.3
10 5xxb:V 63 48 0.0955 0.2381 0.3125 6.8
11 4v5o:AB 204 41 0.0955 0.0735 0.3659 8.4 4bts:AB, 4bts:BB, 4bts:CB, 4bts:DB, 4v5o:BB
12 4czc:A 305 51 0.0955 0.0492 0.2941 8.7
13 2qpp:B 219 43 0.0828 0.0594 0.3023 9.2 2q32:A, 2q32:B, 2qpp:A, 2rgz:A, 2rgz:B, 5uc9:A, 5uc9:B, 5uc9:C, 5uc9:D
14 5llw:B 673 46 0.0764 0.0178 0.2609 9.2 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
15 6et7:A 646 46 0.0764 0.0186 0.2609 9.7 6et7:B
16 8y1j:A 502 60 0.1274 0.0398 0.3333 9.8 8y1j:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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