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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVVLNINTDNMCNFASYRLMPFSGFIVEKDDRIEINDKNWFDMIWNEEYNKMRSQIALPDMSHDKIIENIEYLFNIKILS
KNRIKEFWEEFCKGQKAAIKYITQVHRKNPNTGRRNWNPPEGDFTDNEIEKLYETAYNTLLSLIKYDKNKVYNILINFNP

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8z99:K 372 170 1.0000 0.4301 0.9412 1.45e-112 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K
2 8z99:H 582 160 0.9563 0.2629 0.9563 2.53e-106 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
3 8yhe:H 524 160 0.9313 0.2844 0.9313 1.46e-102 8yhd:H
4 8z9e:H 553 160 0.9250 0.2676 0.9250 7.64e-100
5 3ven:A 571 63 0.1000 0.0280 0.2540 0.70 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A
6 7jsa:J 88 33 0.0750 0.1364 0.3636 1.1 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
7 2fuv:A 545 41 0.0938 0.0275 0.3659 2.8 2fuv:B, 3na5:A, 3na5:B, 3olp:A, 3olp:B
8 5xxb:V 63 30 0.0813 0.2063 0.4333 3.1
9 7sa4:8 203 33 0.0875 0.0690 0.4242 5.5
10 4v5o:AB 204 41 0.0938 0.0735 0.3659 7.7 4bts:AB, 4bts:BB, 4bts:CB, 4bts:DB, 4v5o:BB
11 2qpp:B 219 43 0.0813 0.0594 0.3023 9.8 2q32:A, 2q32:B, 2qpp:A, 2rgz:A, 2rgz:B, 5uc9:A, 5uc9:B, 5uc9:C, 5uc9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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