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BioLiP
>protein
KVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADASGLAVDVLGGAPG
IYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFV
PSEGKTAAELTREEKSAISHRGQALKLLLDALR

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2pyu:A 208 193 1.0000 0.9279 1.0000 1.73e-141 2q16:A, 2q16:B
2 3tqu:A 197 188 0.5285 0.5178 0.5426 2.55e-75 3tqu:B, 3tqu:C, 3tqu:D
3 2dvn:A 186 200 0.3420 0.3548 0.3300 2.38e-24 2dvn:B, 2dvo:A, 2e5x:A, 2zti:A
4 3s86:A 189 193 0.3575 0.3651 0.3575 3.63e-22 3s86:B, 3s86:C, 3s86:D
5 2mjp:A 184 197 0.3420 0.3587 0.3350 4.96e-19
6 2j4e:D 195 187 0.2953 0.2923 0.3048 1.57e-12 2j4e:A, 2j4e:B, 2j4e:C, 2j4e:E, 2j4e:F, 2j4e:G, 2j4e:H
7 3b50:A 310 90 0.1244 0.0774 0.2667 0.15 2cex:A, 2cex:B, 2cex:C, 2cex:D, 2cey:A, 8cp7:A, 6h75:A, 6h76:A, 2v4c:A, 2wx9:A, 2wyk:A, 2wyp:A, 2xa5:A, 2xwi:A, 2xwk:A, 2xwo:A, 2xwv:A, 2xxk:A
8 3r9v:B 163 32 0.0674 0.0798 0.4062 0.57
9 4mnp:A 305 83 0.1036 0.0656 0.2410 2.7
10 8buu:E 206 97 0.1710 0.1602 0.3402 3.2 7aqc:E, 7aqd:E, 7as8:G, 7as9:G, 6ha1:E, 6ha8:E, 6htq:E, 3j3v:E, 3j3w:E, 3j9w:BF, 5njt:Y, 7o5b:b, 7ope:G, 6ppf:E, 6ppk:E, 6pvk:E, 8qcq:E, 7qgu:E, 7qh4:E, 8qpp:b, 7qv1:E, 7qv2:E, 7qv3:E, 8r55:b, 8s1p:E, 8s1u:E, 7s9u:E, 7sae:E, 6tnn:Y, 6tpq:Y
11 5nna:D 264 32 0.0674 0.0492 0.4062 4.0 5nna:A, 5nna:B, 5nna:C, 5nnb:A, 5nnb:B, 5nnb:C, 5nnb:D
12 4lb0:B 347 26 0.0674 0.0375 0.5000 4.6
13 8bhv:b 650 94 0.1192 0.0354 0.2447 7.8 8bhv:j, 8bot:C, 7zyg:B
14 5m99:A 506 40 0.0674 0.0257 0.3250 8.0 5m99:B
15 8dc2:A 673 78 0.0933 0.0267 0.2308 8.8
16 8bh3:C 668 94 0.1192 0.0344 0.2447 8.9 8bh3:L, 8bhy:C, 8bhy:L, 8bot:H, 8bot:U, 7k0y:C, 7nfc:H, 7sgl:C, 7z87:C, 7z88:C
17 6zhe:C 705 94 0.1192 0.0326 0.2447 9.8 8asc:B, 8asc:F, 8asc:L, 8asc:P, 6erf:B, 6erf:D, 6erf:F, 6erf:H, 6erg:E, 6erg:B, 6erh:B, 6erh:D, 8eza:K, 8eza:B, 8ezb:B, 8ezb:K, 1jey:B, 7k1k:C, 7lsy:B, 7lsy:K, 7lt3:B, 7lt3:K, 7nfe:C, 7su3:C, 5y3r:B, 7z6o:B, 6zha:C, 6zhe:H, 7zt6:B, 7zvt:B, 7zwa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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