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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVTLDKKIRRSVMWRSMFLQGSWNYERMQNGGWAYSLIPALKKLYPSGEEAKEALKRHLEFFNTHPYVAAPIIGVTLALE
EERANGADIDDAAIQGVKVGMMGPLAGIGDPVFWFTVRPIVGAIAASLATGGSIIAPLFFFIVWNAIRIAFLWYTQEFGY
KSGSAITKDLGGGLLQTVTKGASILGMFVLGVLIQRWVTINFNGPNAVVSKIPLQKGAYVEFPKGSVSGTQLHDILGQVG
NKLSLDPTKVTYLQDNLNQLIPGLAGLLITLLCMWLLKKKVSPIVIIFGLFVVGILGRWAQIM

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hfs:Z 303 303 1.0000 1.0000 1.0000 0.0 8hfs:F, 8hfs:D
2 7xno:Z 301 303 0.6601 0.6645 0.6601 6.24e-144 7xno:E, 7xno:I, 7xtg:E, 7xtg:I, 7xtg:Z
3 7vlx:Z 298 295 0.6304 0.6409 0.6475 3.68e-134 7vlx:B, 7vlx:D, 7vly:Z, 7vly:D, 7vly:G
4 7dyr:Z 274 289 0.4884 0.5401 0.5121 5.72e-100 7dyr:C, 7dyr:F, 6k1h:Z, 6k1h:F, 6k1h:C
5 7ocn:A 690 104 0.0858 0.0377 0.2500 0.88 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B
6 8fpf:D 666 63 0.0561 0.0255 0.2698 2.7 8fhk:D, 8fmv:D, 7m33:D, 8szc:D, 8t1p:D, 8t3k:D
7 7t3u:C 1575 34 0.0462 0.0089 0.4118 3.4
8 7t3u:A 2020 34 0.0462 0.0069 0.4118 3.5 7t3u:D
9 8tl9:D 2034 34 0.0462 0.0069 0.4118 3.5 8tla:D
10 7t3p:A 2066 34 0.0462 0.0068 0.4118 3.5 7t3p:B, 7t3p:C, 7t3p:D
11 7t3q:A 2103 34 0.0462 0.0067 0.4118 3.5 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
12 7t3r:A 2130 34 0.0462 0.0066 0.4118 3.5 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
13 6dr0:C 2193 34 0.0462 0.0064 0.4118 3.5 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
14 8tkd:A 2249 34 0.0462 0.0062 0.4118 3.5 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
15 8tk8:A 2268 34 0.0462 0.0062 0.4118 3.5 8tk8:B, 8tk8:C, 8tk8:D, 8tkh:A, 8tkh:B, 8tkh:C, 8tkh:D, 8tki:A, 8tki:B, 8tki:C, 8tki:D, 8tl9:C, 8tla:C
16 8tkf:A 2272 34 0.0462 0.0062 0.4118 3.5 8tkf:D, 8tkf:B, 8tkf:C
17 2g28:B 801 38 0.0495 0.0187 0.3947 5.1 2g28:A, 2iea:A, 2iea:B, 1l8a:B, 1l8a:A, 3lpl:A, 3lpl:B, 3lq2:A, 3lq2:B, 3lq4:A, 3lq4:B, 2qta:A, 2qta:B, 2qtc:A, 2qtc:B, 1rp7:A, 1rp7:B
18 2g25:B 831 38 0.0495 0.0181 0.3947 5.2 2g25:A
19 8ba8:A 525 30 0.0495 0.0286 0.5000 6.7 4aaq:A, 4aaq:B, 4aaq:C, 4aaq:D, 4aaq:E, 4aaq:F, 4aaq:G, 4aar:A, 4aar:B, 4aar:C, 4aar:D, 4aar:E, 4aar:F, 4aar:G, 4aas:A, 4aas:B, 4aas:C, 4aas:D, 4aas:E, 4aas:F, 4aas:G, 4aau:N, 4aau:A, 4aau:B, 4aau:C, 4aau:D, 4aau:E, 4aau:F, 4aau:G, 4aau:H, 4aau:I, 4aau:J, 4aau:K, 4aau:L, 4aau:M, 4ab2:A, 4ab2:N, 4ab2:B, 4ab2:C, 4ab2:D, 4ab2:E, 4ab2:F, 4ab2:G, 4ab2:H, 4ab2:I, 4ab2:J, 4ab2:K, 4ab2:L, 4ab2:M, 4ab3:A, 4ab3:B, 4ab3:C, 4ab3:D, 4ab3:E, 4ab3:F, 4ab3:G, 4ab3:H, 4ab3:I, 4ab3:J, 4ab3:K, 4ab3:L, 4ab3:M, 4ab3:N, 1aon:A, 1aon:B, 1aon:C, 1aon:D, 1aon:E, 1aon:F, 1aon:G, 8ba8:B, 8ba8:C, 8ba8:D, 8ba8:E, 8ba8:F, 8ba8:G, 8ba8:H, 8ba8:I, 8ba8:J, 8ba8:K, 8ba8:L, 8ba8:M, 8ba8:N, 8ba9:A, 8ba9:B, 8ba9:C, 8ba9:D, 8ba9:E, 8ba9:F, 8ba9:G, 8ba9:H, 8ba9:I, 8ba9:J, 8ba9:K, 8ba9:L, 8ba9:M, 8ba9:N, 8bkz:X, 8bkz:A, 8bkz:C, 8bkz:E, 8bkz:G, 8bkz:I, 8bkz:K, 8bkz:M, 8bkz:O, 8bkz:Q, 8bkz:S, 8bkz:V, 8bkz:Z, 8bkz:BA, 8bl2:G, 8bl2:A, 8bl2:B, 8bl2:C, 8bl2:D, 8bl2:E, 8bl2:F, 8bl2:H, 8bl2:I, 8bl2:J, 8bl2:K, 8bl2:L, 8bl2:M, 8bl2:N, 8bl7:A, 8bl7:B, 8bl7:C, 8bl7:D, 8bl7:E, 8bl7:F, 8bl7:G, 8bl7:H, 8bl7:I, 8bl7:J, 8bl7:K, 8bl7:L, 8bl7:M, 8bl7:N, 8blc:G, 8blc:A, 8blc:B, 8blc:C, 8blc:D, 8blc:E, 8blc:F, 8blc:H, 8blc:I, 8blc:J, 8blc:K, 8blc:L, 8blc:M, 8blc:N, 8bld:A, 8bld:G, 8bld:B, 8bld:C, 8bld:D, 8bld:E, 8bld:F, 8bld:H, 8bld:I, 8bld:J, 8bld:K, 8bld:L, 8bld:M, 8bld:N, 8ble:A, 8ble:B, 8ble:C, 8ble:D, 8ble:E, 8ble:F, 8ble:G, 8ble:H, 8ble:I, 8ble:J, 8ble:K, 8ble:L, 8ble:M, 8ble:N, 8blf:A, 8blf:G, 8blf:B, 8blf:C, 8blf:D, 8blf:E, 8blf:F, 8blf:H, 8blf:I, 8blf:J, 8blf:K, 8blf:L, 8blf:M, 8blf:N, 8bly:A, 8bly:B, 8bly:C, 8bly:D, 8bly:E, 8bly:F, 8bly:G, 8bly:H, 8bly:I, 8bly:J, 8bly:K, 8bly:L, 8bly:M, 8bly:N, 8bm0:I, 8bm0:G, 8bm0:A, 8bm0:C, 8bm0:D, 8bm0:F, 8bm0:H, 8bm0:K, 8bm0:L, 8bm0:N, 8bm0:O, 8bm0:Q, 8bm0:R, 8bm0:T, 8bm1:I, 8bm1:G, 8bm1:A, 8bm1:C, 8bm1:D, 8bm1:F, 8bm1:H, 8bm1:K, 8bm1:L, 8bm1:N, 8bm1:O, 8bm1:Q, 8bm1:R, 8bm1:T, 8bmd:G, 8bmd:A, 8bmd:B, 8bmd:C, 8bmd:D, 8bmd:E, 8bmd:F, 8bmd:H, 8bmd:I, 8bmd:J, 8bmd:K, 8bmd:L, 8bmd:M, 8bmd:N, 8bmo:C, 8bmo:I, 8bmo:A, 8bmo:B, 8bmo:E, 8bmo:F, 8bmo:H, 8bmo:J, 8bmo:L, 8bmo:M, 8bmo:O, 8bmo:P, 8bmo:R, 8bmo:S, 8bmt:I, 8bmt:A, 8bmt:C, 8bmt:E, 8bmt:G, 8bmt:J, 8bmt:L, 8bmt:N, 8bmt:P, 8bmt:R, 8bmt:T, 8bmt:X, 8bmt:Z, 8bmt:BA, 9c0b:H, 9c0b:O, 9c0b:I, 9c0b:P, 9c0b:J, 9c0b:Q, 9c0b:K, 9c0b:R, 9c0b:L, 9c0b:S, 9c0b:M, 9c0b:T, 9c0b:N, 9c0b:U, 2c7e:A, 2c7e:B, 2c7e:C, 2c7e:D, 2c7e:E, 2c7e:F, 2c7e:G, 1dkd:A, 1dkd:B, 1dkd:C, 1dkd:D, 3e76:A, 3e76:B, 3e76:C, 3e76:D, 3e76:E, 3e76:F, 3e76:G, 3e76:H, 3e76:I, 3e76:J, 3e76:K, 3e76:L, 3e76:M, 3e76:N, 4ki8:A, 4ki8:B, 4ki8:C, 4ki8:D, 4ki8:E, 4ki8:F, 4ki8:G, 1kp8:A, 1kp8:B, 1kp8:C, 1kp8:D, 1kp8:E, 1kp8:F, 1kp8:G, 1kp8:H, 1kp8:I, 1kp8:J, 1kp8:K, 1kp8:L, 1kp8:M, 1kp8:N, 1mnf:A, 1mnf:B, 1mnf:C, 1mnf:D, 1mnf:E, 1mnf:F, 1mnf:G, 1mnf:H, 1mnf:I, 1mnf:J, 1mnf:K, 1mnf:L, 1mnf:M, 1mnf:N, 5opx:A, 5opx:B, 5opx:C, 5opx:D, 5opx:E, 5opx:F, 5opx:G, 5opx:H, 5opx:I, 5opx:J, 5opx:K, 5opx:L, 5opx:M, 5opx:N, 8p4m:A, 8p4m:B, 8p4m:C, 8p4m:D, 8p4m:E, 8p4m:F, 8p4m:G, 8p4n:A, 8p4n:B, 8p4n:C, 8p4n:D, 8p4n:E, 8p4n:F, 8p4n:G, 8p4o:A, 8p4o:B, 8p4o:C, 8p4o:D, 8p4o:E, 8p4o:F, 8p4o:G, 8p4p:A, 8p4p:B, 8p4p:C, 8p4p:D, 8p4p:E, 8p4p:F, 8p4p:G, 8p4p:H, 8p4p:I, 8p4p:J, 8p4p:K, 8p4p:L, 8p4p:M, 8p4p:N, 8p4r:A, 8p4r:B, 8p4r:C, 8p4r:D, 8p4r:E, 8p4r:F, 8p4r:G, 8p4r:H, 8p4r:I, 8p4r:J, 8p4r:K, 8p4r:L, 8p4r:M, 8p4r:N, 7pbj:Ad, 7pbj:Ae, 7pbj:Ak, 7pbj:Al, 7pbj:Ar, 7pbj:As, 7pbj:Ay, 7pbj:Az, 7pbj:Bf, 7pbj:Bg, 7pbj:Bm, 7pbj:Bn, 7pbj:Bt, 7pbj:Bu, 7pbx:Ac, 7pbx:Ad, 7pbx:Ai, 7pbx:Aj, 7pbx:Ao, 7pbx:Ap, 7pbx:Au, 7pbx:Av, 7pbx:Ba, 7pbx:Bb, 7pbx:Bg, 7pbx:Bh, 7pbx:Bm, 7pbx:Bn, 1pcq:A, 1pcq:B, 1pcq:C, 1pcq:D, 1pcq:E, 1pcq:F, 1pcq:G, 1pf9:A, 1pf9:B, 1pf9:C, 1pf9:D, 1pf9:E, 1pf9:F, 1pf9:G, 4pkn:G, 4pkn:A, 4pkn:B, 4pkn:F, 4pkn:E, 4pkn:C, 4pkn:D, 4pkn:K, 4pkn:J, 4pkn:I, 4pkn:L, 4pkn:M, 4pkn:H, 4pkn:N, 4pko:A, 4pko:B, 4pko:C, 4pko:D, 4pko:E, 4pko:F, 4pko:G, 4pko:H, 4pko:I, 4pko:J, 4pko:K, 4pko:L, 4pko:M, 4pko:N, 8qxs:A, 8qxs:B, 8qxs:C, 8qxs:D, 8qxs:E, 8qxs:F, 8qxs:G, 8qxs:H, 8qxs:I, 8qxs:J, 8qxs:K, 8qxs:L, 8qxs:M, 8qxs:N, 8qxt:A, 8qxt:B, 8qxt:C, 8qxt:D, 8qxt:E, 8qxt:F, 8qxt:G, 8qxt:H, 8qxt:I, 8qxt:J, 8qxt:K, 8qxt:L, 8qxt:M, 8qxt:N, 8qxu:A, 8qxu:B, 8qxu:C, 8qxu:D, 8qxu:E, 8qxu:F, 8qxu:G, 8qxu:H, 8qxu:I, 8qxu:J, 8qxu:K, 8qxu:L, 8qxu:M, 8qxu:N, 8qxv:A, 8qxv:B, 8qxv:C, 8qxv:D, 8qxv:E, 8qxv:F, 8qxv:G, 8qxv:H, 8qxv:I, 8qxv:J, 8qxv:K, 8qxv:L, 8qxv:M, 8qxv:N, 8s32:A, 8s32:B, 8s32:C, 8s32:D, 8s32:E, 8s32:F, 8s32:G, 8s32:H, 8s32:I, 8s32:J, 8s32:K, 8s32:L, 8s32:M, 8s32:N, 1svt:A, 1svt:B, 1svt:C, 1svt:D, 1svt:E, 1svt:F, 1svt:G, 1sx3:A, 1sx3:B, 1sx3:C, 1sx3:D, 1sx3:E, 1sx3:F, 1sx3:G, 1sx3:H, 1sx3:I, 1sx3:J, 1sx3:K, 1sx3:L, 1sx3:M, 1sx3:N, 1sx4:A, 1sx4:B, 1sx4:C, 1sx4:D, 1sx4:E, 1sx4:F, 1sx4:G, 3wvl:A, 3wvl:B, 3wvl:C, 3wvl:D, 3wvl:E, 3wvl:F, 3wvl:G, 3wvl:H, 3wvl:I, 3wvl:J, 3wvl:K, 3wvl:L, 3wvl:M, 3wvl:N, 2ynj:A, 2ynj:B, 2ynj:C, 2ynj:D, 2ynj:E, 2ynj:F, 2ynj:G, 2ynj:H, 2ynj:I, 2ynj:J, 2ynj:K, 2ynj:L, 2ynj:M, 2ynj:N, 3zpz:A, 3zpz:B, 3zpz:C, 3zpz:D, 3zpz:E, 3zpz:F, 3zpz:G, 3zq0:A, 3zq0:B, 3zq0:C, 3zq0:D, 3zq0:E, 3zq0:F, 3zq0:G, 3zq1:A, 3zq1:B, 3zq1:C, 3zq1:D, 3zq1:E, 3zq1:F, 3zq1:G
20 5y5r:D 253 40 0.0495 0.0593 0.3750 8.7 5y5r:A, 5y5r:B, 5y5r:C, 5y5r:E, 5y5r:F
21 8gjk:C 1032 95 0.1023 0.0300 0.3263 10.0 8gjl:C, 8gk0:C, 8gk4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218