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BioLiP
>protein
KVSKSTKKFQSKHLKHTLDQRRKEKIQKKRIQGRRGNKT

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8v87:8 477 39 1.0000 0.0818 1.0000 2.51e-19 7nac:8, 7nad:8, 7naf:8, 7r6k:8, 7r72:8, 7r7a:8
2 8i9y:CY 420 27 0.3846 0.0357 0.5556 0.30 8i9x:CY, 8ia0:CY
3 8i9z:CY 382 27 0.3846 0.0393 0.5556 0.31
4 8buz:A 890 26 0.2051 0.0090 0.3077 2.8
5 5tcv:A 299 39 0.2821 0.0368 0.2821 3.2 1wa6:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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