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BioLiP
>protein
KVSHPGEMIARDLEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAALGSTPEFWLRLQSNYDLRQLENQID
TSGIVLYG

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6chv:D 91 88 1.0000 0.9670 1.0000 1.60e-61 6chv:A, 6chv:C, 6chv:B, 6chv:G, 6chv:H
2 2icp:A 87 79 0.3750 0.3793 0.4177 5.10e-21
3 6fix:B 99 76 0.3182 0.2828 0.3684 3.45e-14 6fix:A, 6fix:D, 6fix:E
4 7csy:B 97 87 0.2727 0.2474 0.2759 1.31e-06 7csw:B, 7csy:A, 7csy:C, 7csy:D, 6jpi:A, 6jpi:B, 6jpi:C, 6jpi:D, 6lb3:A, 6lb3:B, 6lb3:G, 6lb3:H, 6lb3:C, 6lb3:D, 6lb3:E, 6lb3:F
5 8kdb:A 2117 71 0.3068 0.0128 0.3803 0.45 8kdc:A
6 8q4s:A 295 33 0.1705 0.0508 0.4545 0.48 7qpl:A
7 8tac:B 66 52 0.1591 0.2121 0.2692 0.49
8 6qyi:B 520 55 0.1818 0.0308 0.2909 1.3 6b1b:A, 6b1b:B, 6eb0:C, 6qyh:B, 6qyi:A
9 5lmx:B 1115 82 0.2159 0.0170 0.2317 2.8
10 5m5w:B 1183 82 0.2159 0.0161 0.2317 3.1 4c2m:B, 4c2m:Q, 4c3h:B, 4c3i:B, 4c3j:B, 5g5l:B, 6h67:B, 6h68:B, 6hko:B, 6hlq:B, 6hlr:B, 5m3f:B, 5m3m:B, 5m5x:B, 5m5y:B, 5m64:B, 5n5y:B, 5n5z:B, 5n60:B, 5n61:B, 5oa1:B, 6rqh:B, 6rql:B, 6rqt:B, 6rrd:B, 6rui:B, 6ruo:B, 6rwe:B, 6tps:B, 5w5y:B, 5w64:B, 5w65:B, 5w66:B, 4ym7:AB, 4ym7:BB, 4ym7:CB, 4ym7:DB, 4ym7:EB, 4ym7:FB
11 2or1:L 63 50 0.1591 0.2222 0.2800 3.5 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
12 4icm:A 335 60 0.1818 0.0478 0.2667 6.2 4icm:B, 4icm:C, 4icm:D, 4icm:E, 4icm:F, 4icm:G, 4icm:H, 4l6d:A, 4l6d:B, 4l6d:C, 4l6d:D, 4l6d:E, 4l6d:F, 4l6d:G, 4l6d:H, 4ng3:A, 4ng3:B, 4ng3:C, 4ng3:D, 4ng3:E, 4ng3:F, 4ng3:G, 4ng3:H, 4ni8:A, 4ni8:B, 4ni8:C, 4ni8:D, 4ni8:E, 4ni8:F, 4ni8:G, 4ni8:H
13 3h4i:A 392 46 0.2159 0.0485 0.4130 9.1 3h4t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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