Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KVPTQPIPLMMNIFRDVLPTVHRYYDQWKERAKSIPDPELRAQALDALERKEFHCEGGGIYGLLARDRFDELIQFIIAYQ
IMCDYLDNLCDQSDYLDPKDFRSLHNALLAALTPGEPLVNYYQYRIEQEDGGYLHELIETCQHILVTFPSFRMVQENMLE
LSQLYGDLQVHKHVVKEERIPRLEAWFNEHKEKMPEMTWFEFSACTGSTLGVYTLATYATKEGLTSEQADVIKAGYFPWV
QGVHLLLDYFIDQEEDIADDELNFLFYYENEEQMIERFQYFVQKAEESLSTLPDPKFHRHIWRGIIAIYLSDEKVQKNKE
LKKKSKQMIKMGGLPSLLFYLNSWIYR

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6loo:A 347 347 1.0000 1.0000 1.0000 0.0 6loo:B, 6lop:A, 6lop:B
2 5kkb:A 469 56 0.0605 0.0448 0.3750 1.7 5kkb:B, 1nxc:A
3 8e56:F 973 134 0.0836 0.0298 0.2164 4.9 8e57:F, 8e58:F, 8eog:D, 8fd7:D, 5gjw:F, 6jp5:F, 6jpa:F, 6jpb:F, 7vfs:B, 7vfu:B, 7vfv:B, 7vfw:B, 7xlq:D, 7yg5:D
4 6h62:A 370 107 0.0692 0.0649 0.2243 6.2 6h62:B
5 3j9d:A 746 103 0.0720 0.0335 0.2427 8.0
6 6m13:b 688 57 0.0461 0.0233 0.2807 8.9 7dsy:a, 7dsy:b, 7dts:a, 7dts:b, 7elw:a, 7elw:b, 6m11:a, 6m11:b, 6m12:a, 6m12:b, 6m13:a, 4o1o:A, 4o1o:B, 4o1o:C, 4o1o:D, 4o1p:A, 4o1p:B, 4o1p:C, 4o1p:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218