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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVMSITPREELRRHFTHWTWLMMYGIAIYFGASIITGGASFLYAKTRLPTYQQGLSLQYLVVVVGPFMIGFVFFGWSALG
VLGVINIELGALSKLLKKDLA

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cxh:C 101 101 1.0000 1.0000 1.0000 3.31e-70
2 7s4l:C 231 161 1.0000 0.4372 0.6273 1.65e-55 7s4l:H, 7s4l:I
3 8oyi:C 236 146 0.5545 0.2373 0.3836 7.64e-22 8oyi:G, 8oyi:K, 7s4h:C, 7s4h:G, 7s4h:K, 7s4i:C, 7s4i:G, 7s4i:K, 7s4j:C, 7s4j:G, 7s4j:K, 7s4k:C, 7s4k:G, 7s4k:K, 8sqw:C, 8sqw:G, 8sqw:K, 8sr1:C, 8sr1:G, 8sr1:K, 8sr2:C, 8sr2:G, 8sr2:K, 8sr4:C, 8sr4:G, 8sr4:K, 7t4p:C, 7t4p:G, 7t4p:K
4 3rgb:C 213 103 0.4554 0.2160 0.4466 5.11e-20 3rgb:K, 3rgb:G
5 1yew:C 188 116 0.4356 0.2340 0.3793 1.22e-15 1yew:G, 1yew:K
6 7s4m:K 241 159 0.5248 0.2199 0.3333 2.40e-15 4pi2:C, 4pi2:G, 4pi2:K, 7s4m:G, 7s4m:C
7 4pi0:C 217 135 0.4851 0.2258 0.3630 2.48e-15 4phz:C, 4phz:G, 4phz:K, 4pi0:G, 4pi0:K, 3rfr:C, 3rfr:G, 3rfr:K
8 3chx:C 159 36 0.1881 0.1195 0.5278 2.35e-06 3chx:G, 3chx:K
9 7qoa:A 401 37 0.1485 0.0374 0.4054 5.7 7qoa:B
10 6z0p:A 242 39 0.1584 0.0661 0.4103 5.9 6z0p:B
11 7qhm:E 331 78 0.2178 0.0665 0.2821 6.3 7q21:G, 7q21:g, 7qhm:R, 7qho:E, 7qho:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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