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BioLiP
>protein
KVLKIRYPDDGEWPGAPIDKDGDGNPEFYIEINLWNILNATGFAEMTYNLTSGVLHYVQQLDNIVLRDRSNWVHGYPEIF
YGNKPWNANYATDGPIPLPSKVSNLTDFYLTISYKLEPKNGLPINFAIESWLTREAWRTTGINSDEQAVMIWIYYDGLQP
AGSKVKEIVVPIIVNGTPVNATFEVWKANIGWEYVAFRIKTPIKEGTVTIPYGAFISVAANISSLPNYTELYLEDVEIGT
EFGTPSTTSAHLEWWITNITLTPLDRPLIS

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vgi:A 270 270 0.9963 0.9963 0.9963 0.0 3wq0:A, 3wq1:A, 3wq7:A, 3wq7:B, 3wr0:A, 3wt3:A, 3wt3:B, 3wxp:A, 3wy6:A
2 7s8k:B 278 260 0.7889 0.7662 0.8192 3.00e-162 7s8k:A
3 3amm:B 261 236 0.3111 0.3218 0.3559 1.30e-51 3amm:A, 3amn:A, 3amn:B, 3amp:A, 3amp:B, 3amq:A, 3amq:B, 3amq:C, 3amq:D, 3vhn:A, 3vhn:B, 3vhn:C, 3vhn:D, 3vhn:E, 3vhn:F, 3vhn:G, 3vhn:H, 3vhp:A, 3vhp:B
4 2bwa:A 226 177 0.1963 0.2345 0.2994 5.29e-09 2bwa:B, 2bwc:A, 2bwc:B, 1h0b:A, 1h0b:B
5 2nlr:A 222 117 0.1370 0.1667 0.3162 0.015
6 2jen:A 233 237 0.2037 0.2361 0.2321 0.029
7 7emf:0 267 68 0.0630 0.0637 0.2500 0.066 7enj:0, 8gxq:c, 8gxs:c, 7nvr:p
8 1joi:A 128 105 0.1185 0.2500 0.3048 0.90
9 9enh:A 544 115 0.1074 0.0533 0.2522 4.0 9enh:B, 9enh:C, 9enh:D, 9eni:A, 9eni:B, 9eni:C, 9eni:D, 9enj:A, 9enj:B, 9enj:C, 9enj:D, 9enk:A, 9enk:B, 9enk:C, 9enk:D, 9enn:A, 9enn:B, 9enn:C, 9enn:D
10 4nni:A 161 35 0.0519 0.0870 0.4000 4.0 4nni:B
11 4z4k:A 282 67 0.0556 0.0532 0.2239 5.9 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
12 4m1m:A 1188 52 0.0667 0.0152 0.3462 9.0 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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