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BioLiP
>protein
KVKLSAKEILEKEFKTGVRGYKQEDVDKFLDMIIKDYETFHQEIEELQQENLQLKKQLE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gpz:A 63 59 0.9831 0.9206 0.9831 5.56e-35 6gp7:B, 6gpz:B
2 8e2c:A 65 62 0.5593 0.5077 0.5323 4.80e-13
3 6gqn:B 62 55 0.4746 0.4516 0.5091 1.94e-12 6gqn:A
4 3uw2:A 458 31 0.2034 0.0262 0.3871 0.55
5 2j22:A 137 28 0.2034 0.0876 0.4286 1.6
6 4im0:A 619 30 0.2203 0.0210 0.4333 2.5 6bny:A, 6bod:A, 6boe:A, 6cq0:A, 6cq4:A, 6cq5:A, 4im2:A, 4im3:A, 6nt9:A, 6nt9:B, 5w5v:A
7 6o8b:B 657 30 0.2203 0.0198 0.4333 2.5 4eut:A, 4eut:B, 4euu:A, 4euu:B, 4iw0:A, 4jl9:A, 4jlc:A, 6o8b:A, 6o8c:B
8 2ood:A 463 28 0.1864 0.0238 0.3929 3.4
9 8ia3:E 111 24 0.2034 0.1081 0.5000 3.8 8ia3:A, 8ia3:B, 8ia3:F
10 7mqa:SC 229 19 0.1356 0.0349 0.4211 4.0 2ipx:A, 7se7:A, 7se8:A, 7se8:B, 7se9:A, 7se9:B, 7sea:A, 7seb:A, 7sec:A, 7sec:B, 7sed:A
11 2y5b:E 325 49 0.2712 0.0492 0.3265 4.7 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
12 6s7o:A 656 17 0.1356 0.0122 0.4706 6.9 6ftg:5, 6fti:5, 6ftj:5, 8pn9:A
13 7a73:A 334 33 0.1864 0.0329 0.3333 7.1
14 7byd:E 238 49 0.2542 0.0630 0.3061 8.2
15 7p50:A 121 21 0.1525 0.0744 0.4286 8.3 7p50:B, 7p50:C
16 6s7t:A 706 17 0.1525 0.0127 0.5294 8.4
17 3c1y:A 349 29 0.2034 0.0344 0.4138 8.5 3c1y:B, 3c21:A, 3c21:B, 3c23:A, 3c23:B, 4yvz:A, 4yvz:B, 4yxj:A, 4yxj:B, 4yxm:A, 4yxm:B
18 7yeh:A 1020 33 0.2203 0.0127 0.3939 9.2 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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