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BioLiP
>protein
KVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFG
IDDQDYQNSVTRSAPINRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVV
MRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYS
LLVGIHDVDRAEQEEMEVEERAEDGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTVNPEQYSKRFNEFMSNILT

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3x03:A 320 320 0.9969 0.9906 0.9906 0.0 7em1:A, 7em1:B, 7em2:A, 7em2:B, 7em3:A, 7em4:A, 7em4:B, 7em5:A, 7em6:A, 7em7:A, 7em8:A, 6k4g:A, 6k4g:B, 6k4h:A, 6k4h:B, 3x01:A, 3x02:A, 3x02:B, 3x03:B, 3x04:A, 3x04:B, 3x05:A, 3x05:B, 3x06:A, 3x06:B, 3x07:A, 3x08:A, 3x09:A, 3x09:B, 3x0a:A, 3x0a:B, 3x0b:A, 3x0b:B, 3x0c:A, 3x0c:B
2 7em5:B 297 317 0.9214 0.9865 0.9243 0.0 7em6:B
3 7n81:B 307 330 0.8836 0.9153 0.8515 0.0 3x01:B
4 6ym4:A 322 323 0.7767 0.7671 0.7647 0.0 7n7j:A, 7n7k:A, 7n7l:A, 7n7m:A, 7n7n:A, 7n7o:A, 6osp:A, 6osp:B, 6ux9:A, 6ux9:B, 6ym3:A, 6ym3:B, 6ym4:B, 6ym5:A, 6ym5:B
5 8c8c:A 297 319 0.7296 0.7811 0.7273 1.83e-171
6 7qpn:A 317 326 0.6855 0.6877 0.6687 1.12e-160 8bq4:A, 8bq4:B, 7qie:A, 7qie:B, 7qie:C, 7qie:D, 7qpn:B
7 6cmw:A 307 332 0.3239 0.3355 0.3102 4.97e-39 6cn2:A, 5e3t:A, 5e3u:A
8 3jb9:X 1195 241 0.1824 0.0485 0.2407 0.52
9 4v61:B3 65 21 0.0220 0.1077 0.3333 1.8 6eri:Ab, 5h1s:c, 5mlc:3, 5mmi:2, 5mmm:2, 5x8p:2, 5x8t:2
10 8buu:1 49 16 0.0314 0.2041 0.6250 2.9 7aqc:c, 7aqd:c, 7as8:g, 7as9:g, 6ha1:1, 6ha8:1, 6htq:2, 3j9w:B5, 5njt:q, 7o5b:1, 7ope:g, 8qcq:1, 7qgu:c, 7qh4:c, 8qpp:1, 7qv1:1, 7qv2:1, 7qv3:1, 8r55:1, 8s1p:1, 8s1u:1, 6tnn:q, 6tpq:q
11 4e4f:B 381 56 0.0440 0.0367 0.2500 3.8 4e4f:C, 4il2:A, 4il2:C, 4il2:D
12 8un9:A 229 62 0.0566 0.0786 0.2903 7.2 8un9:B
13 8p2f:6 48 16 0.0283 0.1875 0.5625 8.0 7asm:1, 7asn:1, 7aso:T, 7asp:A, 6fxc:A1, 6fxc:B1, 6hma:1, 5ngm:A1, 8p2g:6, 8p2h:6, 7p48:1, 6s0x:1, 6s0z:1, 6s12:1, 6s13:1, 5tcu:LS, 8y36:1, 8y37:1, 8y38:1, 8y39:1
14 6chs:A 460 60 0.0597 0.0413 0.3167 9.6 6cdd:A, 6cdd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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