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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGL
QTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATETVS
FEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLV
GVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEW
LKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAE
VWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGER
MQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQE
MAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT

The query sequence (length=611) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ena:6 652 622 0.9885 0.9264 0.9711 0.0 7ad8:A, 8bvw:0, 8ebs:A, 8ebv:A, 8ebw:A, 7egb:6, 7egc:6, 7enc:6, 8gxq:HH, 8gxs:HH, 5ivw:V, 5iy6:V, 5iy7:V, 5iy8:V, 5iy9:V, 7nvr:7, 7nvv:7, 7nvw:7, 7nvx:7, 7nvy:7, 7nvz:7, 7nw0:7, 6o9l:7, 6ro4:A, 8wak:6, 8wal:6, 8wan:6, 8wao:6, 8wap:6, 8waq:6, 8war:6, 8was:6
2 8ebu:A 604 611 0.9853 0.9967 0.9853 0.0 8ebt:A, 8ebx:A, 8eby:A
3 7lbm:W 574 597 0.9394 1.0000 0.9615 0.0
4 7zsa:7 616 596 0.6187 0.6136 0.6342 0.0 8cen:7, 8ceo:7, 7o4i:7, 7o4j:7, 7o4k:7, 7o4l:7, 7o72:7, 7o73:7, 7o75:7, 7zs9:7, 7zsb:7
5 7k04:7 638 611 0.6203 0.5940 0.6203 0.0 5fmf:1, 7m2u:7, 7ml0:7, 7ml1:7, 7ml2:7, 5sva:Z
6 7ml3:7 548 448 0.4730 0.5274 0.6451 0.0
7 7ml3:7 548 97 0.0998 0.1113 0.6289 2.22e-32
8 6gym:7 408 403 0.4206 0.6299 0.6377 0.0 5oqj:7, 5oqm:7
9 6p4f:C 436 377 0.1637 0.2294 0.2653 2.50e-20 6p4f:A, 6p4w:A
10 7r7j:B 574 384 0.1571 0.1672 0.2500 1.40e-06 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
11 8atf:G 442 202 0.0720 0.0995 0.2178 0.020 8oo9:G, 8oos:G
12 2zja:A 700 171 0.0687 0.0600 0.2456 0.022 2zj5:A
13 1z63:A 468 92 0.0426 0.0556 0.2826 0.030 1z63:B
14 1z63:A 468 177 0.0704 0.0919 0.2429 4.9 1z63:B
15 6fml:G 731 202 0.0720 0.0602 0.2178 0.034 8av6:G
16 8oo7:G 704 207 0.0736 0.0639 0.2174 0.052 8oop:G
17 6x2f:A 1144 320 0.1113 0.0594 0.2125 0.29 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
18 6xeo:A 1118 320 0.1113 0.0608 0.2125 0.30
19 1y07:C 124 35 0.0245 0.1210 0.4286 0.33 1y07:A, 1y07:B, 1y07:D
20 6pwf:K 454 192 0.0655 0.0881 0.2083 0.70
21 6xfr:B 216 90 0.0426 0.1204 0.2889 1.2 6xfr:A
22 4gl2:A 617 144 0.0606 0.0600 0.2569 1.3 4gl2:B
23 9bry:c 203 70 0.0327 0.0985 0.2857 1.4
24 7x3t:V 792 186 0.0671 0.0518 0.2204 1.5 6iro:L, 6jyl:K, 6k1p:K, 7x3w:K, 2y9z:A
25 7jl0:A 662 148 0.0606 0.0559 0.2500 1.5 7jl2:A, 7jl2:C, 7jl2:E
26 7jl0:A 662 45 0.0196 0.0181 0.2667 3.7 7jl2:A, 7jl2:C, 7jl2:E
27 5jb2:A 670 127 0.0589 0.0537 0.2835 2.0 5jaj:A, 5jbg:A
28 5jb2:A 670 41 0.0164 0.0149 0.2439 9.9 5jaj:A, 5jbg:A
29 5jbj:A 627 131 0.0622 0.0606 0.2901 2.2
30 5jbj:A 627 116 0.0409 0.0399 0.2155 3.4
31 6wlw:U 205 76 0.0360 0.1073 0.2895 2.7 6wm2:U
32 1ksf:X 714 118 0.0524 0.0448 0.2712 3.1 1mbu:A, 1mbu:B, 1mbx:A, 1mbx:B, 1r6b:X, 1r6o:A, 1r6o:B, 1r6q:A, 1r6q:B, 7uiv:B, 7uiv:C, 7uiv:D, 7uiv:E, 7uiv:A, 7uiv:F, 7uiw:A, 7uiw:B, 7uiw:C, 7uiw:D, 7uiw:E, 7uix:B, 7uix:C, 7uix:D, 7uix:E, 7uix:F, 7uix:A, 7uiy:B, 7uiy:C, 7uiy:D, 7uiy:E, 7uiy:A, 7uiy:F, 7uiz:B, 7uiz:C, 7uiz:D, 7uiz:E, 7uiz:A, 7uiz:F, 7uj0:B, 7uj0:C, 7uj0:D, 7uj0:E, 7uj0:A, 7uj0:F, 6uqe:A, 6uqe:B, 6uqe:C, 6uqe:D, 6uqe:E, 6uqe:F, 6uqo:C, 6uqo:D, 6uqo:A, 6uqo:B, 6uqo:E, 6uqo:F, 6w1z:A, 6w1z:B, 6w1z:C, 6w1z:D, 6w1z:E, 6w1z:F, 6w20:A, 6w20:B, 6w20:C, 6w20:D, 6w20:E, 6w20:F, 6w21:A, 6w21:B, 6w21:C, 6w21:D, 6w21:E, 6w21:F, 6w22:A, 6w22:B, 6w22:C, 6w22:D, 6w22:E, 6w22:F, 6w23:A, 6w23:B, 6w23:C, 6w23:D, 6w23:E, 6w23:F, 6w24:A, 6w24:B, 6w24:C, 6w24:D, 6w24:E, 6w24:F
33 5etl:D 160 89 0.0409 0.1562 0.2809 5.9 6an4:A, 6an6:A, 6an6:B, 1dy3:A, 1eqm:A, 5etk:A, 5etl:A, 5etl:B, 5etl:C, 5etm:A, 5etn:A, 5eto:A, 5etp:A, 1ex8:A, 4f7v:A, 1f9h:A, 1g4c:B, 3hd1:A, 3hd2:A, 1hq2:A, 3hsd:A, 3hsd:B, 3hsg:A, 3ht0:A, 3ilj:A, 3ilo:A, 3ip0:A, 7kdo:A, 7kdr:A, 3kuh:A, 4m5g:A, 4m5h:A, 4m5i:A, 4m5j:A, 4m5k:A, 4m5l:A, 4m5m:A, 4m5n:A, 4m5n:B, 1q0n:A, 1rao:A, 1rb0:A, 1rtz:A, 1ru1:A, 1ru1:B, 1ru2:A, 8sif:A, 1tmj:A, 1tmm:A, 1tmm:B, 3ud5:A, 3ude:A, 3udv:A
34 3b57:A 180 110 0.0327 0.1111 0.1818 6.7
35 2oif:G 154 93 0.0376 0.1494 0.2473 8.1 2oif:A, 2oif:B, 2oif:C, 2oif:D, 2oif:E, 2oif:F, 2oif:H
36 1gtt:A 421 93 0.0426 0.0618 0.2796 10.0 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218