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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVAYLTFDDGPGKYTAELLNTLKQHDAKATFFLIGANVKEFPDLVKRENAEGHYVGMHSMTHNFAKLYKNGEYVNEMKED
QGLIANIIGKSPKLTRPPYGSMPGLNEGLRNKVVEGGFKVWDWTIDSLDWRYNKMPVDAAAAQIAQNVLTNATKPQEVIL
MHDIHPQSVAAVPAILKGLKEKGYEFEAYHEESHFPVNFWHDNRM

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5n1j:A 206 205 1.0000 0.9951 1.0000 2.65e-155 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
2 2c1g:A 384 187 0.3512 0.1875 0.3850 1.13e-34 2c1i:A
3 5o6y:A 214 191 0.3756 0.3598 0.4031 2.47e-34 5o6y:B, 5o6y:C, 5o6y:D
4 6h8l:B 206 187 0.3171 0.3155 0.3476 1.35e-28 6h8l:A, 6h8n:A, 6h8n:B
5 5jmu:A 220 196 0.3122 0.2909 0.3265 5.97e-28
6 2cc0:A 192 179 0.3220 0.3438 0.3687 1.63e-26 2cc0:B
7 2iw0:A 226 188 0.2927 0.2655 0.3191 1.32e-25
8 5jp6:A 339 187 0.3073 0.1858 0.3369 8.08e-22
9 7bly:A 216 180 0.2537 0.2407 0.2889 1.95e-21
10 7ax7:A 205 195 0.2976 0.2976 0.3128 2.39e-21
11 2y8u:B 212 169 0.2683 0.2594 0.3254 1.22e-20 2y8u:A
12 2w3z:A 238 202 0.3073 0.2647 0.3119 5.32e-19
13 8hfa:A 212 203 0.2878 0.2783 0.2906 6.69e-19 8hfa:B, 8hfa:C, 8hfa:D, 8hfa:E
14 2c71:A 205 197 0.2634 0.2634 0.2741 1.44e-17 2c79:A
15 2j13:A 207 190 0.2732 0.2705 0.2947 1.52e-16
16 8he1:A 225 192 0.2488 0.2267 0.2656 1.74e-13 8he2:A, 8he4:A, 8hf9:A
17 4ly4:A 290 103 0.1268 0.0897 0.2524 5.78e-04 4ly4:B, 4ly4:C, 4ly4:D, 3qbu:A, 3qbu:B, 3qbu:C, 3qbu:D
18 3wx7:A 402 67 0.1220 0.0622 0.3731 6.82e-04 3wx7:B
19 4nyu:A 406 67 0.1268 0.0640 0.3881 7.04e-04 4ny2:A, 4ny2:B, 4nyy:A, 4nyy:B, 4nyy:C, 4nyy:D, 4nz1:A, 4nz1:B, 4nz3:A, 4nz3:B, 4nz4:A, 4nz4:B, 4oui:A, 4oui:B
20 2vyo:A 206 195 0.2634 0.2621 0.2769 8.68e-04
21 2buf:K 273 134 0.1707 0.1282 0.2612 0.011
22 2buf:C 298 156 0.1805 0.1242 0.2372 0.24 2buf:A, 2buf:B, 2buf:D, 2buf:E, 2buf:F, 2buf:G, 2buf:H, 2buf:I, 2buf:J, 2buf:L
23 5zns:A 381 118 0.1415 0.0761 0.2458 0.52 5znt:A
24 3cl7:A 302 104 0.1122 0.0762 0.2212 1.2 3cl7:B, 3cl8:A, 3cl8:B
25 7ay1:D 341 63 0.1024 0.0616 0.3333 1.2 8a9j:D, 7ay2:B, 7zh3:D
26 9fcj:D 312 55 0.0976 0.0641 0.3636 1.6 7ay0:B, 9fci:D
27 7rab:A 299 43 0.0829 0.0569 0.3953 1.9 7rab:B, 7rab:C, 7rab:D, 7rab:E, 7rab:F, 7rab:G, 7rab:H, 7rac:A, 7rac:B, 7rac:C, 7rac:D, 7rac:E, 7rac:F, 7rac:G, 7rac:H, 7rac:I, 7rac:J, 7rac:K, 7rac:L
28 8gfp:A 516 76 0.0878 0.0349 0.2368 2.7 6cfc:A, 8gez:A, 8gf0:A, 8gf1:A, 8gfb:A, 8gfc:A, 8gfd:A, 8gfe:A, 8gff:A, 8gfg:A, 8gfh:A, 8gfi:A, 8gfl:A, 8gfm:A, 8gfq:A, 8gfs:A
29 3rxz:C 287 54 0.0683 0.0488 0.2593 2.9 3rxz:A, 3rxz:B, 3rxz:D
30 5nug:A 2920 67 0.0878 0.0062 0.2687 3.7 5nug:B
31 8cup:B 360 46 0.0878 0.0500 0.3913 4.6 8cup:A, 8cuq:B, 8cuq:A, 8fqm:A, 8fqm:B, 8fqm:C, 8fqm:D, 8fqn:A, 8fqo:B, 8fqo:A, 8fqp:B, 8fqp:A, 8fqq:A, 8fqq:B, 8fqr:B, 8fqs:B, 8fqu:B, 8fqu:A, 8fqw:B, 8fqw:A, 6pwl:A, 6pwl:B, 6pwl:C, 6pwl:D, 6pwm:A, 6pwm:B, 6pwm:C, 6pwm:D, 6tzf:A, 6tzf:B, 6tzf:C, 6tzf:D, 6tzg:A, 6tzg:B, 6tzg:C, 6tzg:D, 6tzh:A, 6tzh:B, 6tzh:C, 6tzh:D, 6tzi:A, 6tzi:B, 6tzi:C, 6tzi:D, 6tzj:A, 6tzj:B, 6tzj:C, 6tzj:D, 4u0x:B, 4u0x:A, 4u0x:C, 4u0x:D, 5w12:A, 5w12:B, 5w12:C, 5w12:D, 5w13:A, 5w13:B, 5w13:C, 5w13:D, 5w14:A, 5w14:B, 5w14:C, 5w14:D, 5wac:A, 5wac:B, 5wac:C, 5wac:D, 5wad:A, 5wad:B, 5wad:C, 5wad:D, 5wae:A, 5wae:B, 5wae:C, 5wae:D, 5waf:A, 5waf:B, 5waf:C, 5waf:D, 5wag:B, 5wag:A, 5wag:C, 5wag:D, 6wif:A, 6wif:B, 6wif:C, 6wif:D
32 8ptk:f 4502 67 0.0878 0.0040 0.2687 4.8 8ptk:e
33 6dq3:A 227 64 0.1024 0.0925 0.3281 5.9 6dq3:B
34 8pqw:A 2892 67 0.0878 0.0062 0.2687 6.7 8pqy:A, 8pqz:A, 8pqz:J
35 4yd9:A 1656 60 0.0927 0.0115 0.3167 6.9 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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