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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTYYMDPEGSDSNPGTSDKPFATLVKVQEVVVAGDVVYINPGTYVVPANQVPMTTTNSGLYHCVFHMNKSGEAGKPISYL
ANPNKQGRPIFDLSQVKPKDQRITVFYVTGSNLYLKGFDVIGTQVTITGHTQSECFRIVKGANNNKFEDLRTHDGMAIGF
YLLGGSNNHILNCDAYNNYDSVSEGGKGGNVDGFGGHINSSSVGEGKGTGNVFEGCRAWYNSDDGFDLINCFEAVKIINC
WSFLNGYKPGTKEVAGDGTGFKAGGYGMAADKLPAIPSVIPQHEVRNSLAYYNRLRGFYANHHLGGIIFESNTAVNSGEN
YNMTNRESPLALPPTDVNGYDHMVKNNLSLVTRSGSKHIVMVNRAKSEVSNNSFDGSEEVIETDFISLEEAELMRDRKPN
GDLPDVNFGKLTTDAELRFWGMGCFA

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5olq:C 427 426 1.0000 0.9977 1.0000 0.0 5olq:A, 5olq:B, 5olr:A, 5olr:B, 5olr:C, 5ols:A
2 1ru4:A 400 423 0.3169 0.3375 0.3191 2.84e-42
3 3vsu:A 638 42 0.0376 0.0251 0.3810 0.064 3vsu:B, 3vsu:C, 3vsu:D, 3vsv:A, 3vsv:B, 3vsv:D, 3vsv:C
4 7v6m:A 570 78 0.0610 0.0456 0.3333 0.62
5 7v6i:A 597 47 0.0516 0.0369 0.4681 1.4
6 4m99:A 206 48 0.0376 0.0777 0.3333 1.6 4m99:B, 4m99:C
7 5lw3:A 381 30 0.0329 0.0367 0.4667 2.8
8 3zhb:D 294 82 0.0563 0.0816 0.2927 5.3 3zhb:A, 3zhb:B, 3zhb:C
9 5zb8:A 400 47 0.0282 0.0300 0.2553 6.8 7k30:A, 7k31:A, 7k32:A, 7k33:A, 5zb8:B, 5zb8:C, 5zb8:D, 5zb8:E
10 8sor:A 1156 49 0.0399 0.0147 0.3469 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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