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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTPYEILGGEAGALAIANRFYDIMATDEYAKPLYDMHPLPLDRIRQVFFEFLSGWLGGPDLFVAKHGHPMLRKRHMPFTI
DQDLRDQWMYCMNKTLDLEVDNPLLREGLKQSFGQLASHMINQH

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uur:A 124 124 1.0000 1.0000 1.0000 7.74e-92 4uur:B
2 2xyk:B 130 122 0.4032 0.3846 0.4098 1.88e-29 2xyk:A
3 1ux8:A 118 122 0.3468 0.3644 0.3525 2.61e-19
4 5v3u:A 131 121 0.3145 0.2977 0.3223 6.02e-19 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
5 2bkm:A 128 123 0.3387 0.3281 0.3415 9.99e-18 2bkm:B
6 1ngk:B 127 127 0.3548 0.3465 0.3465 1.04e-13 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
7 4uzv:A 129 99 0.2742 0.2636 0.3434 2.03e-12 2bmm:A
8 5d1v:A 121 122 0.3145 0.3223 0.3197 2.44e-11 5d1v:B
9 4c0n:A 150 53 0.1613 0.1333 0.3774 6.34e-07 4c44:A
10 4nk2:A 164 75 0.1935 0.1463 0.3200 6.26e-06 4nk1:A, 4nk1:B, 4nk2:B
11 8tls:A 116 62 0.1694 0.1810 0.3387 0.009 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
12 3aq5:A 117 66 0.1694 0.1795 0.3182 0.041 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
13 7ddb:A 223 65 0.1371 0.0762 0.2615 0.077 7ddb:B
14 1dlw:A 116 79 0.1613 0.1724 0.2532 0.077 1uvy:A
15 1dly:A 121 52 0.1210 0.1240 0.2885 1.1 1uvx:A
16 5xmj:C 212 27 0.0968 0.0566 0.4444 2.8 5xmj:G, 5xmj:K, 5xmj:O
17 5lqw:Q 791 31 0.0968 0.0152 0.3871 3.0
18 8ebl:A 335 60 0.1371 0.0507 0.2833 3.5 6do3:A, 6do3:B, 6do4:B, 6do4:A, 6do5:B, 6do5:A, 8ebl:B, 8ebm:A, 8ebm:B, 8pif:A, 8pif:B, 8sge:A, 8sge:B, 8sgf:B, 8sgf:A, 8uxs:A, 8uxs:B
19 7dco:1 930 31 0.0968 0.0129 0.3871 3.5 6g90:O, 5gm6:G, 5nrl:O, 5zwm:1, 5zwo:1
20 4wcj:A 233 19 0.0806 0.0429 0.5263 5.0
21 1bhg:A 611 45 0.1371 0.0278 0.3778 5.6 1bhg:B, 3hn3:A, 3hn3:B, 3hn3:D, 3hn3:E
22 5o5c:B 468 28 0.0887 0.0235 0.3929 6.9 5o5c:A, 5o5c:C, 5o5c:D, 5o5c:E, 5o5c:F
23 4v6w:CV 134 23 0.0968 0.0896 0.5217 8.3 6xu6:CV, 6xu7:CV, 6xu8:CV
24 8imx:S 513 55 0.0887 0.0214 0.2000 8.4 8imy:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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