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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVD
DVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRAFYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPE
TKAPLAPLCTPGRTPRTLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIEAD
FQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGP
EAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAAQFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKD
LMDKASAAINQALRHH

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c6g:A 420 416 1.0000 0.9905 1.0000 0.0 7c63:A, 7c64:A, 7c64:B, 7c66:A, 7c66:B, 7c67:A, 7c67:B, 7c68:A, 7c68:B, 7c69:A, 7c69:B, 7c6f:A, 7c6g:B, 7c6h:A, 7c6h:B, 7c6i:A, 7c6i:B, 7c6j:A, 7c6j:B, 7c6k:A, 7c6l:A, 7c6l:B, 7c6m:A, 7c6n:A, 7c6n:B, 7c6r:A, 7c6t:A, 7c6v:A, 7c6v:B, 7c6v:C, 7c6w:A, 7c6z:A, 7c6z:B, 7c70:A, 7c70:B, 7c71:A
2 7x0l:A 409 419 0.3798 0.3863 0.3771 1.58e-89 7x0j:A, 7x0j:B, 7x0k:A, 7x0k:B, 7x0l:B, 7x0m:A, 7x0m:B, 7x0n:A, 7x0n:B
3 5ysd:B 389 418 0.2596 0.2776 0.2584 2.12e-32 5ysb:A, 5ysb:B, 5ysd:A, 5yse:A, 5yse:B, 5ysf:A, 5ysf:B
4 3jzj:A 388 355 0.2356 0.2526 0.2761 1.09e-23 3k00:A, 3k02:A
5 5ci5:A 393 337 0.2043 0.2163 0.2522 2.07e-23 5ci5:B
6 1eu8:A 407 352 0.2091 0.2138 0.2472 2.77e-17
7 8art:B 393 345 0.2091 0.2214 0.2522 2.27e-16 8art:A
8 6dtq:A 391 375 0.2139 0.2276 0.2373 7.49e-15 6dtq:B, 6dtq:C, 6dtq:D
9 2zyo:A 385 199 0.1490 0.1610 0.3116 8.55e-14 2zyk:A, 2zyk:B, 2zyk:C, 2zyk:D, 2zym:A, 2zyn:A
10 6dts:A 379 430 0.2308 0.2533 0.2233 3.61e-13 8dhd:A, 6dts:B, 2fnc:A
11 1elj:A 380 345 0.2115 0.2316 0.2551 8.97e-13
12 4hw8:A 376 406 0.2236 0.2473 0.2291 4.73e-12 4hw8:B
13 7ehp:A 397 395 0.2476 0.2594 0.2608 5.60e-12 7ehp:B
14 6dtu:A 375 418 0.2284 0.2533 0.2273 1.03e-11 6dtu:B, 2gha:A, 2gha:B
15 5tu0:A 385 372 0.2163 0.2338 0.2419 1.06e-10
16 7c0k:B 397 371 0.2212 0.2317 0.2480 1.30e-10 7c0f:A, 7c0f:B, 7c0k:A, 7c0l:A, 7c0l:B, 7c0o:A, 7c0o:B, 7c0r:A, 7c0r:B, 7c0s:A, 7c0s:B, 7c0t:A, 7c0t:B, 7c0u:A, 7c0u:B, 7c0v:A, 7c0v:B, 7c0w:A, 7c0w:B, 7c0x:A, 7c0x:B, 7c0y:A, 7c0y:B, 7c0z:A, 7c0z:B, 7c14:A, 7c14:B, 7c15:A, 7c15:B, 7c16:A, 7c16:B, 7c19:A, 7c19:B
17 1urg:A 373 376 0.2139 0.2386 0.2367 4.59e-10 1urd:A, 1urd:B, 1urs:A, 1urs:B
18 4r9f:A 402 364 0.1851 0.1915 0.2115 2.80e-07 4r9g:A, 4r9g:B
19 4qrz:A 383 370 0.1803 0.1958 0.2027 4.68e-07 4qsc:A, 4qsd:A
20 2gh9:A 378 404 0.2332 0.2566 0.2401 5.72e-07
21 7v09:A 403 206 0.1346 0.1390 0.2718 6.10e-07 7v09:B
22 7bvt:A 391 416 0.2212 0.2353 0.2212 6.73e-07
23 2xd3:A 375 353 0.2091 0.2320 0.2465 7.81e-07
24 4r2f:A 394 398 0.2043 0.2157 0.2136 9.75e-06
25 4aq4:A 418 307 0.1755 0.1746 0.2378 1.58e-05 6x84:B
26 7qhv:AAA 390 262 0.1466 0.1564 0.2328 3.33e-05 7ofy:A, 7ofy:B, 7qhv:BBB, 8s5b:A, 7yzs:AAA, 7yzu:A
27 7caf:E 443 77 0.0745 0.0700 0.4026 1.31e-04 8hpl:E, 8hpm:E, 8hpn:E, 8hpr:E
28 6r1b:B 395 353 0.2019 0.2127 0.2380 1.63e-04 6r1b:A, 6r1b:C, 6r1b:D
29 7ehq:A 406 223 0.1322 0.1355 0.2466 2.03e-04 7ehu:A
30 5mk9:A 378 359 0.1779 0.1958 0.2061 2.22e-04 5m28:A, 5mka:A, 5mtt:A, 5mtu:A
31 8ja7:E 443 83 0.0721 0.0677 0.3614 2.31e-04 8ja8:A, 8ja9:A, 8jaa:A, 8jab:A, 8jac:A, 8jad:A, 7wda:A, 7wda:B, 7wda:C, 7wda:D
32 6rjy:A 415 378 0.1947 0.1952 0.2143 5.17e-04 6rkh:A, 6rkj:A, 6rkl:A, 6rkx:A, 6rl1:A, 6rl2:A
33 6jam:A 406 420 0.2356 0.2414 0.2333 6.36e-04 6j9w:A, 6j9y:A, 6jad:A, 6jag:A, 6jah:A, 6jai:A, 6jan:A, 6jao:A, 6jap:A, 6jaq:A, 6jar:A, 6jaz:A, 6jb0:A, 6jb4:A, 6jba:A, 6jbb:A, 6jbe:A
34 5f7v:A 388 254 0.1370 0.1469 0.2244 0.001
35 6lce:A 407 342 0.1659 0.1695 0.2018 0.002 6lcf:A, 6lcf:B
36 6ffl:A 383 163 0.1010 0.1097 0.2577 0.003
37 6ffl:A 383 60 0.0481 0.0522 0.3333 0.11
38 4rya:A 417 243 0.1418 0.1415 0.2428 0.004
39 7ape:A 435 55 0.0505 0.0483 0.3818 0.055 7ape:B
40 1gth:A 1019 76 0.0577 0.0236 0.3158 0.12 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
41 2w7y:A 389 98 0.0721 0.0771 0.3061 0.41 2w7y:B
42 4elq:A 310 127 0.0769 0.1032 0.2520 0.65 4elp:A, 4elp:B, 4elp:C, 4elp:D, 4elq:B, 4elr:A, 4elr:B, 3wae:A, 3wae:B
43 1si0:A 316 57 0.0433 0.0570 0.3158 1.2 1si1:A
44 5z6b:A 393 140 0.0697 0.0738 0.2071 1.2
45 8bfy:A 393 392 0.2212 0.2341 0.2347 1.8
46 7vfq:C 397 64 0.0505 0.0529 0.3281 2.3 7vfq:A, 7vfq:B, 7vfq:D, 7vfr:A
47 6mvh:D 305 192 0.1154 0.1574 0.2500 2.4
48 2r7k:A 358 73 0.0457 0.0531 0.2603 6.6 2r7l:A, 2r7m:A, 2r7n:A
49 6rxt:UA 839 29 0.0264 0.0131 0.3793 7.1 5oql:A, 6rxu:UA, 6rxv:UA, 6rxx:UA, 6rxy:UA, 6rxz:UA
50 5ugr:A 323 35 0.0337 0.0433 0.4000 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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