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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTITFLPCNNESLAAKCLRVLHGFNYQYETRNIGVSFPLWCDATVGKKISFVSLLKQHYFVQMEQLQYFHIYVSFRRCQS
IDKLTAAGLARKIRRLEKFDPSSFAQKEHTAIAHYHSLGESSKQTNRNFRLNIRM

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6v9q:H 135 135 1.0000 1.0000 1.0000 6.07e-101 6vbw:H
2 6pif:H 198 164 1.0000 0.6818 0.8232 3.06e-89 8fuk:H, 6lnb:A, 6lnc:A, 6pig:H, 6pij:H, 6uvn:A
3 7u5d:H 202 41 0.1407 0.0941 0.4634 9.07e-08 7u5e:H
4 3ejx:D 301 26 0.0963 0.0432 0.5000 0.67 3ejx:A, 3ejx:B, 3ejx:C, 3ejx:E, 3ejx:F, 3ekm:A, 3ekm:B, 3ekm:C, 3ekm:D, 3ekm:E, 3ekm:F
5 8sw0:A 864 55 0.1407 0.0220 0.3455 1.3 8sw1:A
6 4bdt:A 563 40 0.1111 0.0266 0.3750 3.1 8aen:B, 8aen:A, 8aev:A, 8aev:B, 6cqt:A, 6cqt:B, 6cqu:A, 6cqu:B, 6cqv:A, 6cqv:B, 6cqw:A, 6cqw:B, 6cqx:A, 6cqx:B, 6cqy:A, 6cqy:B, 6cqz:A, 6cqz:B, 7d9o:A, 7d9o:B, 7d9p:A, 7d9p:B, 7d9q:A, 7d9q:B, 8dt4:A, 8dt4:B, 8dt5:A, 8dt5:B, 8dt7:A, 8dt7:B, 7e3h:A, 7e3h:B, 4ey5:A, 4ey5:B, 4ey6:A, 4ey6:B, 4ey7:A, 4ey7:B, 6f25:A, 6f25:B, 5hf6:B, 5hf6:A, 5hf8:A, 5hf8:B, 5hf9:A, 5hf9:B, 5hfa:A, 5hfa:B, 5hq3:A, 5hq3:B, 4m0e:A, 4m0e:B, 4m0f:A, 4m0f:B, 6nea:A, 6nea:B, 6ntg:A, 6ntg:B, 6nth:A, 6nth:B, 6ntk:A, 6ntk:B, 6ntl:A, 6ntl:B, 6ntm:A, 6ntm:B, 6ntn:A, 6ntn:B, 6nto:A, 6nto:B, 6o4w:A, 6o4w:B, 6o4x:A, 6o4x:B, 6o50:A, 6o50:B, 6o52:A, 6o52:B, 6o5r:A, 6o5r:B, 6o5s:A, 6o5s:B, 6o5v:A, 6o5v:B, 6o66:A, 6o66:B, 7p1n:aa, 7p1n:A, 7p1n:bb, 7p1p:aa, 7p1p:A, 7p1p:bb, 7rb5:A, 7rb6:A, 7rb6:B, 7rb7:A, 7rb7:B, 6u34:A, 6u34:B, 6u37:A, 6u37:B, 6u3p:A, 6wuv:A, 6wuv:B, 6wuy:A, 6wuy:B, 6wuz:A, 6wuz:B, 6wv1:A, 6wv1:B, 6wvc:A, 6wvc:B, 6wvo:A, 6wvo:B, 6wvp:A, 6wvp:B, 6wvq:A, 6wvq:B, 7xn1:A, 7xn1:B, 6zwe:A
7 8wk4:b 164 31 0.1111 0.0915 0.4839 3.5 7cgo:Cy, 7cgo:Ci, 7cgo:Ea, 7cgo:Ec, 7cgo:Ed, 7cgo:Ee, 7cgo:Ef, 7cgo:Cr, 7cgo:Cs, 7cgo:Ct, 7cgo:Cm, 7cgo:Cn, 7cgo:Cb, 7cgo:Cc, 7cgo:Cd, 7cgo:Ch, 7cgo:Ca, 7cgo:Eh, 7cgo:Cf, 7cgo:Cg, 7cgo:Cv, 7e81:Ea, 7e81:Ec, 7e81:Ed, 7e81:Ee, 7e81:Ef, 7e81:Cr, 7e81:Cs, 7e81:Ct, 7e81:Cm, 7e81:Cn, 7e81:Cb, 7e81:Cc, 7e81:Cd, 7e81:Ch, 7e81:Ca, 7e81:Fh, 7e81:Cf, 7e81:cg, 7e81:Cv, 8wk4:c, 8wk4:d, 8wk4:W, 8wk4:X, 8wk4:Y, 8wk4:Z, 8wk4:Q, 8wk4:R, 8wk4:S, 8wk4:T, 8wk4:L, 8wk4:M, 8wk4:N, 8wk4:F, 8wk4:G, 8wk4:H, 8wk4:A, 8wk4:B, 8wk4:g, 8wk4:h, 8wk4:a, 8wk4:U, 8wk4:V, 8wk4:O, 8wk4:I, 8wkq:AM, 8wkq:4, 8wl2:Ao, 8wl2:AV, 8wln:AM, 8wln:4, 8wln:x, 8wlt:Ao, 8wlt:AV, 8wlt:BV, 8wo5:Ao, 8wo5:AV, 8wo5:BV, 8woe:Ao, 8woe:AV
8 6mf5:B 262 16 0.0741 0.0382 0.6250 5.6 6mf4:A, 6mf5:A, 6mf6:B, 6mf6:A
9 6hiw:DC 1095 40 0.0815 0.0100 0.2750 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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