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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAKDQTDL
DLALDWALEKQPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSE
DIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMIRSTDL

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3lm8:A 214 214 1.0000 0.9953 0.9953 1.04e-156 3lm8:B, 3lm8:C, 3lm8:D
2 3mel:C 214 212 0.3427 0.3411 0.3443 2.14e-31 3mel:A, 3mel:B, 3mel:D
3 3ihk:B 208 204 0.3052 0.3125 0.3186 1.03e-19 3ihk:A, 3ihk:C
4 2f17:A 255 156 0.1972 0.1647 0.2692 7.86e-10 2f17:B, 1ig3:A, 1ig3:B
5 3s4y:A 224 148 0.1784 0.1696 0.2568 9.24e-08 3s4y:B
6 1d9y:A 309 30 0.0563 0.0388 0.4000 1.4 1o7t:A, 1o7t:B, 1o7t:C, 1o7t:D, 1o7t:E, 1o7t:F, 1o7t:G, 1o7t:H, 1o7t:I, 1r1n:A, 1r1n:B, 1r1n:C, 1r1n:D, 1r1n:E, 1r1n:F, 1r1n:G, 1r1n:H, 1r1n:I, 1xc1:A, 1xc1:B, 1xc1:C, 1xc1:D, 1xc1:E, 1xc1:F, 1xc1:G, 1xc1:H, 1xc1:I
7 6c8w:A 357 28 0.0563 0.0336 0.4286 1.9 6c85:A, 6c85:B, 6c8w:B
8 5t9c:E 263 62 0.0610 0.0494 0.2097 2.6 5t91:A, 5t9b:G
9 8dy7:H 85 55 0.0704 0.1765 0.2727 3.5 8dy9:H
10 7zvj:B 587 57 0.0798 0.0290 0.2982 3.8 7zvj:A
11 2ics:A 368 43 0.0704 0.0408 0.3488 4.1
12 3v0s:A 287 91 0.1268 0.0941 0.2967 5.6 3v0t:A
13 6ww7:A 927 81 0.0845 0.0194 0.2222 6.2
14 3ro0:B 209 127 0.1643 0.1675 0.2756 8.7 3ro0:A, 3ro0:C, 3ro0:D
15 2ap1:A 305 30 0.0610 0.0426 0.4333 9.1
16 5dzw:A 417 61 0.0751 0.0384 0.2623 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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