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BioLiP
>protein
KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS
ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAA
KHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQI
GVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKTAAEQLGITIPEAVLARATSTK

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lkv:A 296 296 1.0000 1.0000 1.0000 0.0
2 3lft:A 295 291 0.4054 0.4068 0.4124 6.23e-72 3lft:B
3 6hni:A 295 282 0.3716 0.3729 0.3901 9.05e-68
4 5lqw:Q 791 163 0.1419 0.0531 0.2577 0.013
5 8ok9:A 430 92 0.0878 0.0605 0.2826 0.45 2bgg:A, 8pvv:A, 8qg0:A, 6t5t:A, 6tuo:A, 2w42:A, 6xu0:A, 6xu0:B, 6xup:A, 6xup:B, 1ytu:A, 1ytu:B
6 2bgg:B 394 92 0.0878 0.0660 0.2826 0.51 2w42:B
7 1hw5:A 208 79 0.0811 0.1154 0.3038 0.85 6b6h:G, 6b6h:H, 1cgp:A, 1cgp:B, 2cgp:A, 5ciz:A, 6dt4:A, 6dt4:B, 4ft8:A, 4ft8:B, 3fwe:A, 1g6n:A, 1g6n:B, 2gzw:A, 2gzw:B, 2gzw:C, 2gzw:D, 1hw5:B, 4hzf:A, 4hzf:B, 4i01:A, 4i01:B, 4i02:A, 4i02:B, 4i02:C, 4i02:D, 4i02:E, 4i02:F, 4i09:A, 4i09:B, 4i0a:A, 4i0a:B, 4i0b:A, 4i0b:B, 1i5z:A, 1i5z:B, 1i6x:A, 1i6x:B, 3iyd:G, 3iyd:H, 1j59:A, 1j59:B, 3kcc:A, 3kcc:B, 1lb2:A, 3n4m:A, 4n9i:A, 4n9i:B, 4n9i:C, 4n9i:D, 1o3q:A, 1o3r:A, 1o3s:A, 1o3t:A, 1o3t:B, 6pb4:G, 6pb4:H, 6pb5:G, 6pb5:H, 6pb6:H, 6pb6:G, 3qop:A, 3qop:B, 4r8h:A, 4r8h:B, 3rdi:A, 3rdi:B, 3rou:A, 3rou:B, 3rpq:A, 3rpq:B, 1run:A, 1run:B, 1ruo:A, 1ruo:B, 3ryp:A, 3ryp:B, 3ryr:A, 3ryr:B, 1zrc:A, 1zrc:B, 1zrd:A, 1zrd:B, 1zre:A, 1zre:B, 1zrf:A, 1zrf:B
8 2x7x:A 301 95 0.0811 0.0797 0.2526 1.2 2x7x:B
9 5nmx:D 409 50 0.0574 0.0416 0.3400 3.5 5nmw:A, 5nmw:B, 5nmw:C, 5nmw:D, 5nmx:A, 5nmx:B, 5nmx:C
10 8g32:A 327 36 0.0338 0.0306 0.2778 4.3 8g32:B
11 1ydf:A 255 68 0.0676 0.0784 0.2941 4.8
12 8ab3:A 330 59 0.0608 0.0545 0.3051 7.4 8ab3:B, 8ab3:C, 8ab3:D
13 3ndc:A 236 39 0.0439 0.0551 0.3333 7.5 3ndc:B
14 8agd:A 1111 122 0.1081 0.0288 0.2623 7.9 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
15 2fty:A 532 48 0.0574 0.0320 0.3542 9.7 2fty:B, 2fty:C, 2fty:D, 2fvk:A, 2fvk:B, 2fvk:C, 2fvk:D, 2fvm:A, 2fvm:B, 2fvm:C, 2fvm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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