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BioLiP
>protein
KSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETSGLHILDT
LMTLDAENATSIVEDLLAARTNISPIFMRYAFKLNKESAERIMINVIESCEALVNAPSWDAFIAASPYAEKIQQHVKEDS
EKDELKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSYYFSNPQARELAMEFYRQLLAVCQSGER
EHLPQVIRQYGIASGHIWNQMKMTLPSNFTED

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4p9u:E 272 272 1.0000 1.0000 1.0000 0.0 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
2 5dv5:A 267 267 0.8419 0.8577 0.8577 7.07e-176 5dv5:B
3 1h9t:A 232 265 0.5037 0.5905 0.5170 6.87e-92 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
4 2di3:A 231 75 0.0882 0.1039 0.3200 6.05e-05 2di3:B
5 4u0v:A 243 54 0.0772 0.0864 0.3889 1.52e-04 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
6 4wwc:A 213 54 0.0772 0.0986 0.3889 1.60e-04
7 6wfq:C 228 68 0.0809 0.0965 0.3235 0.002 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
8 5d4s:B 83 48 0.0625 0.2048 0.3542 0.12 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
9 6za0:A 240 57 0.0772 0.0875 0.3684 0.18 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
10 7u5q:A 217 37 0.0625 0.0783 0.4595 0.60 7u5q:B
11 4ipi:A 351 109 0.1029 0.0798 0.2569 1.0 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
12 7yvv:A 335 106 0.0993 0.0806 0.2547 1.9
13 4fx4:B 133 39 0.0515 0.1053 0.3590 2.0 4fx4:A
14 7zla:B 458 49 0.0441 0.0262 0.2449 2.3 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
15 2q1f:A 991 56 0.0662 0.0182 0.3214 2.4 2q1f:B
16 7zn5:B 435 49 0.0441 0.0276 0.2449 2.4 7zn5:A
17 5fjs:B 702 61 0.0551 0.0214 0.2459 8.3
18 5fjs:A 733 61 0.0551 0.0205 0.2459 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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