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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KSMPFIKHLASSDRKVRTAALNSLHAFLSARQVASALTTLDVLKLWKGLFYALWMCDRAIPQQNLCNELADLIWQLPRES
VATWLRGFWATMAREWTGIDVLRMEKFLLLVRRVLGASFKWMKKDGSTGAWDQSKVDEVLGLLAEWPFSLAEEVRITGEI
VQKIPVGMRLHVLDIWVDEVERVGLLNEDEEEARMIVQRISDMVDALEQTTKSPAVRTRSKDSLGDDRLPANR

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i9p:Cc 236 239 0.9828 0.9703 0.9582 2.62e-163 6emf:B, 8i9r:Cc, 8i9t:Cc, 8i9v:Cc
2 6c0f:z 243 246 0.3519 0.3374 0.3333 9.40e-36 8e5t:z, 6em1:4, 6em3:4, 6em4:4, 7ohs:4, 7ohw:4, 7ohx:4, 8v83:w, 8v84:w
3 8ev3:4 211 180 0.3090 0.3412 0.4000 2.05e-35 8eti:4
4 5z3g:X 202 232 0.3305 0.3812 0.3319 5.07e-31
5 8fkp:NO 305 181 0.2575 0.1967 0.3315 1.62e-22 8fkr:NO, 8fkt:NO, 8fkv:NO
6 2qkk:A 154 57 0.0730 0.1104 0.2982 2.1 2qk9:A, 2qkb:A, 2qkb:B, 2qkk:B, 2qkk:E, 2qkk:F, 2qkk:I, 2qkk:J, 2qkk:M, 2qkk:N, 2qkk:R, 2qkk:S, 2qkk:W, 8swb:A, 8swc:A, 6vrd:A
7 6ru4:A 276 64 0.0687 0.0580 0.2500 2.2 6r5s:A, 6r5s:B, 6ru4:B, 6ru4:C, 6ru4:D
8 6s2e:A 1006 58 0.0815 0.0189 0.3276 3.3 6s2f:A
9 3f11:A 316 37 0.0558 0.0411 0.3514 6.2 2pt2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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