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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KSIFNEPDVDFHLKLNQQLFHIPYELLSKRIKHTQAVINKETKSLHEHTAALNQIFEDELALAKITEMIRKVDHIERFLN
TQIKSYCQILNRIKKRLEFFHELKDIKSQGTRTKLIQWYQSYTNILIGDYLTRNNPIKYHWNSGVVFLKQSQLDDLIDYD
VLLEANRISTSLLHERNLLPLISWINENKKTLTKKSSILEFQARLQEYIELNLLDDQRWSVLNDLFLSDFYSMYGISQND
PLLIYLSLGISSLKTRDCLHPDLQLFTLHSLKRKNCPVCSETFKPITQALPFAHHIQSQLFENPILLPNGNVYDSKKLKK
LAKTLKKQNLISLNPGQIMDPVDMKIFCESDSIKMYPT

The query sequence (length=358) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ns4:i 358 358 1.0000 1.0000 1.0000 0.0
2 8pmq:9 412 414 0.9944 0.8641 0.8599 0.0
3 2m7q:A 69 30 0.0335 0.1739 0.4000 0.58 4bmj:C, 4bmj:H, 4bmj:J, 5yt6:F, 5yt6:B, 5yt6:H
4 3j1o:J 159 163 0.0978 0.2201 0.2147 2.2 3rj1:J, 3rj1:Q, 7ui9:h, 7uif:h, 7uig:h, 7uio:Ah, 7uio:Bh
5 7upn:C 208 62 0.0447 0.0769 0.2581 3.9 7upn:F
6 8b17:A 451 45 0.0475 0.0377 0.3778 4.8 8b18:A, 8b19:A, 8b1a:A, 8b1b:A, 8b1c:A, 8b1d:A, 8b1e:A, 8b1f:A, 8b1g:A, 8b1h:A, 8b1i:A, 8b1j:A, 8b1k:A
7 9bct:M 648 61 0.0531 0.0293 0.3115 6.1 9bct:J, 9bcu:J, 9bcu:M
8 4z4k:A 282 27 0.0307 0.0390 0.4074 6.9 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
9 1lxy:A 409 106 0.0615 0.0538 0.2075 7.6 1lxy:B, 1s9r:A, 1s9r:B
10 3x1d:A 381 29 0.0391 0.0367 0.4828 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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