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BioLiP
>protein
KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISL
IERDAFLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ngk:B 127 126 0.9921 0.9843 0.9921 2.56e-90 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
2 4uzv:A 129 124 0.5397 0.5271 0.5484 6.60e-42 2bmm:A
3 5d1v:A 121 122 0.4524 0.4711 0.4672 5.22e-31 5d1v:B
4 2bkm:A 128 125 0.3730 0.3672 0.3760 4.02e-23 2bkm:B
5 5v3u:A 131 122 0.3413 0.3282 0.3525 1.01e-22 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
6 1ux8:A 118 120 0.3730 0.3983 0.3917 4.80e-21
7 2xyk:B 130 113 0.3254 0.3154 0.3628 1.69e-15 2xyk:A
8 4uur:A 124 127 0.3413 0.3468 0.3386 1.85e-12 4uur:B
9 4c0n:A 150 116 0.2619 0.2200 0.2845 4.37e-10 4c44:A
10 2ksc:A 123 56 0.1429 0.1463 0.3214 4.28e-05 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
11 3aq5:A 117 112 0.2063 0.2222 0.2321 9.32e-05 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
12 1dlw:A 116 78 0.1429 0.1552 0.2308 7.02e-04 1uvy:A
13 2hz1:A 123 59 0.1270 0.1301 0.2712 0.001 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
14 1s56:B 135 60 0.1270 0.1185 0.2667 0.004 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
15 4nk2:A 164 49 0.1270 0.0976 0.3265 0.009 4nk1:A, 4nk1:B, 4nk2:B
16 8tls:A 116 120 0.2222 0.2414 0.2333 0.47 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
17 1dly:A 121 64 0.1270 0.1322 0.2500 0.86 1uvx:A
18 4v4n:Aj 94 33 0.0952 0.1277 0.3636 2.2 6skf:Bl, 6skg:Bl, 6th6:Bl, 4v6u:Bj
19 1zov:A 381 39 0.1270 0.0420 0.4103 6.5 1zov:B
20 4xdi:A 127 59 0.1111 0.1102 0.2373 7.0 6cii:A, 4xdi:B
21 4iqd:A 290 58 0.1429 0.0621 0.3103 7.6 4iqd:B
22 2vpq:B 448 34 0.1270 0.0357 0.4706 8.3 2vpq:A
23 2o52:A 167 22 0.0873 0.0659 0.5000 9.4 2o52:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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