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BioLiP
>protein
KSEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQ
SPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a0b:A 118 117 1.0000 0.9915 1.0000 4.93e-82 1a0b:A
2 4o8m:A 303 90 0.1966 0.0759 0.2556 0.19 4o8m:B, 4o8m:C, 4o8m:D, 4o8m:E, 4o8m:F, 4o8m:G, 4o8m:H
3 4gi5:B 261 31 0.1111 0.0498 0.4194 0.85 4gi5:A
4 3p7i:A 300 32 0.0940 0.0367 0.3438 0.93
5 4v4n:AU 121 33 0.1026 0.0992 0.3636 1.4 4v6u:BU
6 6skf:BX 120 33 0.1026 0.1000 0.3636 2.0 6skg:BX, 6th6:BX
7 2gge:D 376 74 0.2137 0.0665 0.3378 3.0 2gge:A, 2gge:B, 2gge:C, 2gge:E, 2gge:F, 2gge:G, 2gge:H
8 6ow4:F 284 76 0.1880 0.0775 0.2895 4.4 6ow4:A, 6ow4:B, 6ow4:C, 6ow4:D, 6ow4:E, 6ow4:G, 6ow4:H
9 5hqm:A 459 84 0.2222 0.0566 0.3095 4.4 5han:A, 5han:B, 5han:C, 5han:D, 5han:E, 5han:F, 5han:G, 5han:H, 5han:I, 5han:J, 5han:K, 5han:L, 5hao:A, 5hao:B, 5hao:C, 5hao:D, 5hao:E, 5hao:F, 5hat:A, 5hat:B, 5hat:C, 5hat:D, 5hat:E, 5hat:F, 5hat:G, 5hat:H, 5hat:I, 5hat:J, 5hat:K, 5hat:L, 5hjx:A, 5hjx:B, 5hjx:C, 5hjx:D, 5hjx:E, 5hjx:F, 5hjy:A, 5hjy:B, 5hjy:C, 5hjy:D, 5hjy:E, 5hjy:F, 5hk4:A, 5hk4:B, 5hk4:C, 5hk4:D, 5hk4:E, 5hk4:F, 5hql:A, 5hql:B, 5hql:C, 5hql:D, 5hql:E, 5hql:F, 5hqm:B, 5koz:A, 5koz:B, 5koz:C, 5koz:D, 5koz:E, 5koz:F, 5koz:G, 5koz:H, 5koz:I, 5koz:J, 5koz:K, 5koz:L, 4lf1:A, 4lf1:B, 4lf1:C, 4lf1:D, 4lf1:E, 4lf1:F, 4lf2:A, 4lf2:C, 4lf2:D
10 3zkn:A 375 17 0.0684 0.0213 0.4706 6.4 7d5b:A, 7d5u:A, 2ewy:A, 2ewy:B, 2ewy:C, 2ewy:D, 7f1g:A, 6jsz:A, 7n4n:A, 6uj0:A, 6uj0:B, 6uj1:A, 6uj1:B, 3zki:A, 3zki:B, 3zkn:B, 3zks:A, 3zlq:A, 3zlq:B
11 5aup:I 241 55 0.1538 0.0747 0.3273 7.1 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
12 4zel:A 550 39 0.1197 0.0255 0.3590 8.2
13 1e6v:A 545 31 0.0940 0.0202 0.3548 9.8 1e6v:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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