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BioLiP
>protein
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1okh:A 46 46 1.0000 1.0000 1.0000 1.17e-27 1okh:B
2 2v9b:A 46 46 0.8043 0.8043 0.8043 5.98e-21 2v9b:B
3 1bhp:A 45 46 0.5435 0.5556 0.5435 1.31e-10
4 1wuw:A 45 46 0.5435 0.5556 0.5435 9.87e-10 1wuw:B
5 2plh:A 45 46 0.5435 0.5556 0.5435 3.61e-09
6 2dwc:B 409 40 0.3478 0.0391 0.4000 0.12 2dwc:A
7 5hnw:K 329 12 0.1739 0.0243 0.6667 3.1 5hle:A, 5hny:K, 3x2t:B
8 3x2t:A 311 12 0.1739 0.0257 0.6667 3.7 2kin:A, 3kin:A, 3kin:C
9 6du6:C 512 34 0.2609 0.0234 0.3529 4.1 6du6:A, 6du6:B, 6du6:D
10 1a3w:A 492 38 0.2826 0.0264 0.3421 4.2 1a3w:B, 1a3x:A, 1a3x:B
11 6gg3:E 481 34 0.3043 0.0291 0.4118 4.4 3h6o:C, 8hmu:B, 6nu1:A
12 6gg3:F 524 34 0.2826 0.0248 0.3824 5.4 1a49:A, 1a49:B, 1a49:C, 1a49:D, 1a49:E, 1a49:F, 1a49:G, 1a49:H, 1a5u:A, 1a5u:B, 1a5u:C, 1a5u:D, 1a5u:E, 1a5u:F, 1a5u:G, 1a5u:H, 1aqf:A, 1aqf:B, 1aqf:C, 1aqf:D, 1aqf:F, 1aqf:G, 1aqf:H, 4b2d:A, 4b2d:B, 4b2d:C, 4b2d:D, 6b6u:A, 6b6u:B, 3bjf:A, 3bjf:B, 3bjf:C, 3bjf:D, 3bjt:A, 3bjt:B, 3bjt:C, 3bjt:D, 1f3w:A, 1f3w:B, 1f3w:C, 1f3w:D, 1f3w:E, 1f3w:F, 1f3w:G, 1f3w:H, 1f3x:A, 1f3x:B, 1f3x:C, 1f3x:D, 1f3x:E, 1f3x:F, 1f3x:G, 1f3x:H, 8f5t:A, 8f5t:B, 8f5t:C, 8f5t:D, 8f5t:E, 8f5t:F, 8f5t:G, 8f5t:H, 8f5u:A, 8f5u:B, 8f5u:C, 8f5u:D, 8f6m:A, 8f6m:B, 8f6m:C, 8f6m:D, 8f6m:E, 8f6m:F, 8f6m:G, 8f6m:H, 4fxf:A, 4fxf:D, 4fxf:C, 4fxf:B, 4fxj:A, 4fxj:C, 4fxj:D, 4g1n:A, 4g1n:B, 4g1n:C, 4g1n:D, 8g2e:A, 2g50:A, 2g50:B, 2g50:C, 2g50:D, 2g50:E, 2g50:F, 2g50:G, 2g50:H, 6gg3:A, 6gg3:C, 6gg3:D, 6gg3:G, 6gg3:H, 6gg3:K, 6gg3:L, 6gg4:A, 6gg4:B, 6gg5:A, 6gg5:B, 6gg6:A, 6gg6:B, 6gg6:C, 6gg6:D, 6gg6:E, 6gg6:F, 6gg6:G, 6gg6:H, 3gqy:A, 3gqy:B, 3gqy:C, 3gqy:D, 3gr4:A, 3gr4:B, 3gr4:C, 3gr4:D, 3h6o:B, 3h6o:D, 8hmq:B, 8hmr:A, 8hmr:B, 8hmr:C, 8hmr:D, 8hms:A, 8hms:B, 8hms:C, 8hmu:A, 8hmu:C, 8hmu:D, 6jfb:A, 6jfb:B, 6jfb:C, 6jfb:D, 4jpg:A, 4jpg:B, 4jpg:C, 4jpg:D, 7l21:A, 7l21:B, 7l21:C, 7l21:D, 3me3:A, 3me3:C, 3me3:D, 3n25:A, 3n25:B, 3n25:C, 3n25:D, 3n25:E, 3n25:F, 3n25:G, 3n25:H, 6nu1:C, 6nu1:D, 6nu5:A, 6nu5:B, 6nub:A, 6nub:B, 1pkn:A, 4qg6:B, 4qg6:D, 4qg8:B, 4qg8:C, 4qg9:A, 4qg9:B, 7r6y:A, 7r6y:B, 3srd:A, 3srd:B, 3srd:C, 3srd:D, 3srf:C, 3srf:A, 3srf:B, 3srf:D, 3srf:E, 3srf:F, 3srf:G, 3srf:H, 1t5a:A, 1t5a:B, 1t5a:C, 1t5a:D, 6ttf:A, 6ttf:B, 6ttf:C, 6ttf:D, 6ttq:A, 6ttq:B, 6ttq:C, 6ttq:D, 3u2z:A, 3u2z:B, 3u2z:C, 3u2z:D, 6v74:A, 6v74:B, 6v75:C, 6v75:A, 6v75:B, 6v76:C, 6v76:A, 6v76:B, 4wj8:A, 4wj8:B, 4wj8:C, 4wj8:D, 6wp3:A, 6wp4:A, 6wp4:B, 6wp4:C, 6wp4:D, 6wp5:B, 6wp5:A, 6wp5:C, 6wp6:C, 6wp6:A, 5x0i:A, 5x0i:B, 5x0i:C, 5x0i:D, 5x1v:A, 5x1v:B, 5x1v:C, 5x1v:D, 5x1w:A, 5x1w:B, 5x1w:C, 5x1w:D, 4yj5:A, 4yj5:B, 4yj5:C, 4yj5:D
13 6v74:C 499 34 0.2826 0.0261 0.3824 6.0 3h6o:A, 8hmq:A, 8hmq:C, 8hmq:D, 8hms:D, 3me3:B
14 6nu1:B 452 34 0.2826 0.0288 0.3824 6.6 7r6y:C
15 6v76:D 431 34 0.2826 0.0302 0.3824 7.2 1aqf:E, 4fxj:B, 6gg3:I, 6gg3:J, 6gg4:C, 6gg4:D, 6gg5:C, 6gg5:D, 4qg6:A, 4qg6:C, 7r6y:D, 4rpp:A, 4rpp:B, 4rpp:C, 4rpp:D, 6tth:A, 6tth:B, 6tth:C, 6tth:D, 6tti:A, 6tti:B, 6tti:C, 6tti:D, 6v74:D, 6v75:D, 6wp3:B, 6wp5:D
16 8amz:H 394 17 0.1739 0.0203 0.4706 7.2
17 6msj:A 413 17 0.1739 0.0194 0.4706 9.6 8cvt:A, 5gjq:H, 5gjr:H, 5gjr:v, 5l4g:H, 5m32:c, 6msb:A, 6msd:A, 6mse:A, 6msg:A, 6msk:A, 7qxn:A, 7qxp:A, 7qxu:A, 7qxw:A, 7qxx:A, 7qy7:A, 7qya:A, 7qyb:A, 5t0c:AA, 5t0c:BA, 5t0g:A, 5t0h:A, 5t0i:A, 5t0j:A, 5vfp:A, 5vfq:A, 5vfr:A, 5vfs:A, 7w37:A, 7w38:A, 7w39:A, 7w3a:A, 7w3b:A, 7w3f:A, 7w3g:A, 7w3h:A, 7w3i:A, 7w3j:A, 7w3k:A, 6wjd:A, 6wjn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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