Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KSAKEKLLDEMQDVYNKISQAENSWLTISNEFDLISRLLVRAQQQNWGTPNIFIKVVAQVEDAVNNKAVARAYNTTKQRV
KKVSRENEDSMAQEDFFTRLQTIIDSRGKKTVNQQSLISTLEELLTVAEKPYEFIMAYLTLIPSRFDASANLSYQPIDQW
KSSFNDISKLLSILDQTIDTYQVNEFADPIDFIEDEPKEDSDGVKRILGSIFSFVERLDDEFMKSLLNIDPHSSDYLIRL
RDEQSIYNLILRTQLYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNIIPAQFKSKFTSKDQLDSADY
VDNLIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLC
LIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLLIEIPRMTAFYS
GIKVKRIPYSPKSIRRSLEHYDKLSFQGPPETLRDYVLFAAKSMQKGNWRDSVKYLREIKSWALLPNMETVLNSLTERVQ
VESLKTYFFSFKRFYSSFSVAKLAELFDLPENKVVEVLQSVIAELEIPAKLNDEKTIFVVEKGDEITKLEEAMVKL

The query sequence (length=636) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gsn:q 675 658 1.0000 0.9422 0.9666 0.0 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
2 3jap:p 634 581 0.8852 0.8880 0.9690 0.0 6fyx:q, 6fyy:q
3 8oz0:J 687 662 0.3050 0.2824 0.2931 1.23e-79 8pj2:y, 8pj3:y, 7qp7:y
4 7a09:C 633 664 0.2987 0.3002 0.2861 9.88e-72 8xxn:3C, 6zon:C, 6zp4:C, 6zvj:C
5 8pj1:y 731 544 0.2642 0.2298 0.3088 9.89e-72 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
6 8pj1:y 731 118 0.0440 0.0383 0.2373 3.9 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
7 7ase:C 696 269 0.0881 0.0805 0.2082 6.42e-14
8 7qa8:B 299 62 0.0299 0.0635 0.3065 0.49 7ad3:B, 7ad3:A, 7qa8:A, 7qb9:A, 7qb9:B, 7qbc:A, 7qbc:B, 7qbi:A, 7qbi:B
9 8pv1:La 108 55 0.0220 0.1296 0.2545 2.0 8pv2:La, 8pv3:La, 8pv4:La, 8pv5:La, 8pv6:La, 8pv7:La, 8pv8:La, 8pvk:La, 8pvl:La
10 6usf:A 464 72 0.0393 0.0539 0.3472 2.0 6cnj:A, 6cnj:D, 6cnk:A, 6cnk:B, 6cnk:D, 5kxi:A, 5kxi:D, 6ur8:A, 6ur8:D, 6usf:D
11 7olc:La 148 55 0.0220 0.0946 0.2545 3.2 7old:La, 8oo0:La, 7z3n:La, 7z3o:La
12 8dba:J 510 89 0.0377 0.0471 0.2697 4.0 8dba:C, 8dba:B, 8dba:F, 8dba:I, 8dba:L
13 7r81:c1 148 52 0.0236 0.1014 0.2885 5.1
14 2ggs:A 273 50 0.0252 0.0586 0.3200 5.1 2ggs:B
15 4j2l:B 123 38 0.0252 0.1301 0.4211 9.0 4j2j:A, 4j2j:B, 4j2j:C, 4j2l:A, 2m41:B
16 7v09:A 403 80 0.0362 0.0571 0.2875 9.9 7v09:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218