Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHAD
GFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPV
HKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDN

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c2o:A 228 226 1.0000 0.9912 1.0000 1.28e-167 8c2o:B
2 4bin:A 348 220 0.4646 0.3017 0.4773 8.42e-67
3 8c0j:A 200 223 0.3673 0.4150 0.3722 7.90e-43 8c0j:C
4 3ne8:A 226 223 0.3894 0.3894 0.3946 9.06e-41
5 5emi:A 180 223 0.3451 0.4333 0.3498 4.12e-33
6 7rag:B 197 236 0.2788 0.3198 0.2669 6.18e-21
7 7tj4:B 176 222 0.2832 0.3636 0.2883 1.10e-19 7tj4:D
8 1jwq:A 179 222 0.2832 0.3575 0.2883 6.30e-19
9 4rn7:A 186 220 0.2743 0.3333 0.2818 1.44e-18
10 7b3n:B 170 90 0.1549 0.2059 0.3889 3.07e-15 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
11 5j72:A 638 224 0.2699 0.0956 0.2723 7.89e-13 5j72:B
12 7ago:A 214 242 0.2345 0.2477 0.2190 1.03e-05 7agl:A
13 7agm:A 218 241 0.2566 0.2661 0.2407 1.86e-05 7agm:B
14 4m6g:A 214 241 0.2301 0.2430 0.2158 4.95e-05 4lq6:A, 4m6i:A, 4m6i:B
15 4yn2:A 281 69 0.0885 0.0712 0.2899 0.23
16 2am1:A 454 55 0.0841 0.0419 0.3455 3.1 2am2:A, 3zm5:A, 3zm6:A
17 7d58:A 1387 39 0.0531 0.0087 0.3077 3.7 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
18 3l2n:A 376 53 0.0796 0.0479 0.3396 6.9 3l2n:B
19 4otg:A 324 62 0.0752 0.0525 0.2742 7.6
20 4oth:A 306 62 0.0752 0.0556 0.2742 7.7 4oti:A
21 5f5n:A 289 32 0.0531 0.0415 0.3750 7.9 5f5n:B
22 1xov:A 315 42 0.0575 0.0413 0.3095 8.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218