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BioLiP
>protein
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8osk:M 316 57 1.0000 0.1804 1.0000 1.08e-32 4h10:B, 8osl:M, 8osl:O
2 1am9:C 82 48 0.3509 0.2439 0.4167 3.63e-06 1am9:D, 1am9:A, 1am9:B
3 8osl:N 290 46 0.3333 0.0655 0.4130 8.01e-05 4h10:A, 8osk:N, 8osl:P
4 7d8t:A 199 52 0.3684 0.1055 0.4038 4.68e-04 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
5 7f09:C 67 36 0.2632 0.2239 0.4167 7.61e-04
6 1a0a:A 63 54 0.2456 0.2222 0.2593 0.004 1a0a:B
7 4zpr:A 235 48 0.2807 0.0681 0.3333 0.009
8 5nj8:D 134 49 0.2807 0.1194 0.3265 0.013
9 8ow1:B 116 50 0.2807 0.1379 0.3200 0.015 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
10 5nj8:A 176 42 0.2807 0.0909 0.3810 0.031 5nj8:C, 5v0l:B
11 7xi4:A 283 55 0.2982 0.0601 0.3091 0.033 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
12 7v7w:B 288 51 0.2456 0.0486 0.2745 0.036
13 7f2f:B 94 54 0.2807 0.1702 0.2963 0.043 7f2f:A
14 7xi3:A 287 50 0.2807 0.0557 0.3200 0.098
15 8duj:J 3892 37 0.2105 0.0031 0.3243 0.18
16 4zpk:B 321 47 0.2456 0.0436 0.2979 0.75 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
17 7xi3:B 314 25 0.1930 0.0350 0.4400 1.1 7xhv:B, 7xi4:B
18 3fxg:A 407 16 0.1404 0.0197 0.5000 3.0 3fxg:B, 3fxg:C, 3fxg:D, 3fxg:E, 3fxg:F, 3fxg:G, 3fxg:H
19 5eyo:C 88 48 0.2281 0.1477 0.2708 4.8 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
20 5by0:A 465 39 0.2281 0.0280 0.3333 5.0 5f13:A, 5f13:B, 5f13:C, 3pt1:A
21 1hlo:A 80 49 0.2281 0.1625 0.2653 5.4
22 8duj:D 3865 29 0.1754 0.0026 0.3448 6.1
23 8duj:G 3933 29 0.1754 0.0025 0.3448 6.1
24 8dve:G 3944 29 0.1754 0.0025 0.3448 6.2 8dtb:A, 8dve:D, 8dve:A, 8dve:J
25 3be2:A 290 25 0.1579 0.0310 0.3600 8.4 3b8q:B, 3b8r:A, 3b8r:B, 3cjf:A, 3cp9:A, 3cp9:B, 3cpb:B, 3cpc:B, 3dtw:A, 3dtw:B, 3efl:A, 3efl:B, 5ew3:A, 5ew3:B, 2p2i:A, 2p2i:B, 2qu6:A, 2qu6:B, 1y6a:A, 1y6b:A, 1ywn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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