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BioLiP
>protein
KRSGKPSDLPDYKQVYLPYDTAPTKTELDRERRKFMHAYSGRMEHRKMVEVKDVPQNMYTYGKEGMSIPISIFKDQADPV
IGPEWTYPGIFENKIVAQHWYMEELFDREKSNTFESPWQRQVLDNQVKRRLGKVAWRMSMLNIKTIDIFHKERGA

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:Av 155 155 1.0000 1.0000 1.0000 2.17e-116 7ane:Av
2 6hiv:BV 155 155 0.7355 0.7355 0.7355 4.62e-83 6hix:BV
3 6skf:Ak 125 47 0.1097 0.1360 0.3617 0.86 6skg:Ak, 6th6:Ak
4 8jjr:G 173 51 0.1032 0.0925 0.3137 1.5
5 8fs6:G 298 49 0.1032 0.0537 0.3265 1.6
6 6gmh:B 1132 62 0.0903 0.0124 0.2258 4.7 8a3y:B, 6gml:B, 8p4a:B, 8p4b:B, 8p4c:B, 8p4d:B, 8p4e:B, 7pks:B, 8rbx:B, 8s51:B, 8s5n:B, 6ted:B, 7unc:B, 7und:B, 7ycx:2
7 2v5d:A 722 24 0.0710 0.0152 0.4583 4.8 2cbi:A, 2cbi:B, 2cbj:A, 2cbj:B, 2j1a:A, 2j1e:A, 2j62:A, 2j62:B, 2j7m:A, 7khv:A, 7khv:B, 7khv:C, 7khv:D, 7khv:E, 7khv:F, 5oxd:A, 6rhe:A, 2v5c:A, 2v5c:B, 2vur:A, 2vur:B, 2wb5:A, 2wb5:B, 2x0y:A, 2x0y:B, 2xpk:A, 2xpk:B, 2ydq:A, 2ydr:A, 2yds:A, 4zxl:A
8 5iy6:B 1165 62 0.0903 0.0120 0.2258 5.1 8a40:B, 7b0y:B, 8b3d:B, 8b3f:B, 8bvw:B, 8byq:B, 8bz1:B, 7edx:p, 7eg7:p, 7eg8:p, 7eg9:p, 7ega:p, 7egb:p, 7egc:p, 7ena:PB, 7enc:PB, 6exv:B, 5flm:B, 8gxq:PB, 8gxs:PB, 5iy7:B, 5iy8:B, 5iy9:B, 5iya:B, 5iyb:B, 5iyc:B, 5iyd:B, 7lbm:B, 7nvr:B, 7nvs:B, 7nvt:B, 7nvu:B, 7nvy:B, 7nvz:B, 7nw0:B, 8oeu:B, 8oev:B, 8oew:B, 8of0:B, 5oik:B, 7okx:B, 7oky:B, 7ol0:B, 7oo3:B, 7oob:B, 7oop:B, 7opc:B, 7opd:B, 8p4f:B, 8s52:B, 8s54:B, 8s55:B, 8uha:B, 8uhd:B, 8uhg:B, 8ui0:B, 8uis:B, 8w8e:B, 8w8f:B, 8wak:p, 8wal:p, 8wan:p, 8wao:p, 8wap:p, 8waq:p, 8war:p, 8was:p, 8wat:p, 8wau:p, 8wav:p, 8waw:p, 8wax:p, 8way:p, 8waz:p, 8wb0:p, 7zwd:B, 7zx7:B, 7zx8:B
9 6tz6:E 146 45 0.0774 0.0822 0.2667 7.6 6tz6:B
10 7r4p:A 337 30 0.0710 0.0326 0.3667 8.0 7m2o:A, 2rdt:A, 2w0u:A, 2w0u:B, 2w0u:C, 2w0u:D, 6w44:A, 6w45:A, 6w4c:A
11 4i9b:A 496 29 0.0839 0.0262 0.4483 8.1 4i8q:A, 4i9b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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