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BioLiP
>protein
KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fqp:A 67 62 0.9394 0.9254 1.0000 4.93e-42 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
2 4xrm:B 64 59 0.4545 0.4688 0.5085 1.43e-17 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
3 1lfu:P 82 62 0.3636 0.2927 0.3871 5.66e-12 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4egc:A 539 60 0.4242 0.0519 0.4667 1.59e-08
5 1mnm:C 77 51 0.2727 0.2338 0.3529 4.53e-04 1mnm:D
6 1akh:B 78 49 0.2727 0.2308 0.3673 5.90e-04 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
7 2d5v:A 135 35 0.2424 0.1185 0.4571 0.014 2d5v:B, 8t0f:A, 8t11:A
8 2cw9:A 182 40 0.2576 0.0934 0.4250 0.097
9 5zjr:A 64 35 0.2121 0.2188 0.4000 0.49 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
10 5eea:G 63 41 0.1970 0.2063 0.3171 0.94 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 1zq3:P 68 57 0.3030 0.2941 0.3509 0.94
12 3q9n:A 138 56 0.2121 0.1014 0.2500 1.6 3q9n:B, 3q9u:A, 3q9u:B
13 1le8:A 53 27 0.1667 0.2075 0.4074 2.3 1akh:A, 1yrn:A
14 4n83:A 285 25 0.1212 0.0281 0.3200 2.5 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
15 2d5a:A 142 41 0.1667 0.0775 0.2683 3.8 2e6u:X
16 3lrp:A 181 27 0.1364 0.0497 0.3333 4.1
17 4v4s:AY 365 34 0.1364 0.0247 0.2647 4.4 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
18 6pd2:C 616 23 0.1364 0.0146 0.3913 4.8 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
19 5mdy:7 324 34 0.1364 0.0278 0.2647 5.0
20 3vth:A 753 46 0.2121 0.0186 0.3043 5.4 3vth:B, 3vti:A, 3vti:B
21 1fjl:A 65 32 0.1818 0.1846 0.3750 5.7 1fjl:B, 1fjl:C
22 7d56:C 640 19 0.1212 0.0125 0.4211 6.7 7d56:B, 7d56:A, 7d5r:A, 7d5r:B, 7d8n:A, 7d8n:B, 7dan:C, 7dan:B, 7dan:A
23 4j19:A 77 62 0.2273 0.1948 0.2419 7.7 4j19:B
24 7c9m:C 260 42 0.2273 0.0577 0.3571 8.0 7c7m:A, 7c9m:A, 7c9m:B, 7c9m:D
25 5bp4:R 637 14 0.1212 0.0126 0.5714 8.8 5bp4:O, 5bp4:Q
26 5bp4:L 897 14 0.1212 0.0089 0.5714 8.9 5bp4:I
27 5bp4:A 1102 14 0.1212 0.0073 0.5714 8.9 5bp2:A, 5bp4:B, 5bp4:C, 5bp4:D, 5bp4:E, 5bp4:F, 5bp4:G, 5bp4:H, 5bp4:J, 5bp4:K, 5bp4:M, 5bp4:N, 5bp4:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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