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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKKEYLSGRSLLGKRPFELPDIIKKTN
IEQMRSTLPALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEGQL
PPWCMKMKDIGLPTGYPDLKIAGLNWDITNLKGDVYGKIIPNHHRNYFGALISFETPEFE

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dco:2 220 223 0.9227 0.9227 0.9103 1.21e-146 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
2 7vpx:2 187 208 0.3727 0.4385 0.3942 4.24e-39 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
3 8i0r:2 250 214 0.3727 0.3280 0.3832 1.61e-38 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
4 7dvq:2 216 202 0.3591 0.3657 0.3911 6.38e-37 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
5 7q3l:B 110 133 0.2182 0.4364 0.3609 3.84e-20
6 7s7b:F 352 99 0.1136 0.0710 0.2525 0.011 7s7b:B, 7s7c:B
7 2fna:A 352 69 0.1045 0.0653 0.3333 0.34 2fna:B
8 8hov:A 87 21 0.0500 0.1264 0.5238 3.3 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
9 7yh5:B 177 37 0.0500 0.0621 0.2973 8.2 7yh5:A, 7yh5:C, 7yh5:E, 7yh5:F
10 2zo4:A 301 69 0.0727 0.0532 0.2319 9.8
11 6ly5:S 220 55 0.0773 0.0773 0.3091 9.9 6l4t:15, 6l4u:15, 6ly5:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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