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BioLiP
>protein
KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m3d:C 108 55 0.9643 0.5000 0.9818 2.65e-32 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
2 6m3d:C 108 51 0.8750 0.4537 0.9608 2.14e-28 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
3 4qtr:C 57 53 0.6250 0.6140 0.6604 4.00e-16 4qtr:A, 4qtr:B, 4qtr:D
4 4rdu:D 62 56 0.5179 0.4677 0.5179 6.83e-16 4rdu:A, 4xrs:I, 4xrs:G
5 8eml:A 58 55 0.5179 0.5000 0.5273 1.62e-14 8eml:B
6 2me6:A 71 56 0.5179 0.4085 0.5179 3.54e-14
7 1ig7:A 58 56 0.4821 0.4655 0.4821 5.77e-14
8 1zq3:P 68 52 0.4821 0.3971 0.5192 8.54e-14
9 1b72:A 68 53 0.4643 0.3824 0.4906 8.34e-13
10 2r5z:A 75 55 0.5000 0.3733 0.5091 9.55e-13 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
11 6es3:K 72 51 0.4286 0.3333 0.4706 1.01e-12 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 1jgg:A 57 55 0.4643 0.4561 0.4727 1.37e-12 1jgg:B
13 1ahd:P 68 56 0.5000 0.4118 0.5000 3.50e-12
14 3rkq:A 58 56 0.4643 0.4483 0.4643 4.59e-12 3rkq:B
15 4cyc:A 66 53 0.4464 0.3788 0.4717 8.30e-12 1b8i:A
16 4uus:A 67 53 0.4464 0.3731 0.4717 1.11e-11 4uus:E
17 2h1k:B 60 56 0.4821 0.4500 0.4821 2.00e-11 2h1k:A
18 8pna:A 67 56 0.4107 0.3433 0.4107 4.25e-11 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 3a01:A 78 54 0.3929 0.2821 0.4074 2.48e-10 3a01:E
20 3a01:F 61 54 0.4107 0.3770 0.4259 3.35e-10 3a01:B, 3lnq:A
21 2lkx:A 68 54 0.4107 0.3382 0.4259 7.49e-10
22 5hod:A 61 54 0.4107 0.3770 0.4259 8.87e-10 5hod:D
23 1fjl:A 65 56 0.3929 0.3385 0.3929 2.07e-09 1fjl:B, 1fjl:C
24 5eea:G 63 54 0.3750 0.3333 0.3889 2.80e-09 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
25 1puf:A 77 53 0.4107 0.2987 0.4340 3.19e-09 2lp0:A
26 5flv:M 229 50 0.4286 0.1048 0.4800 4.31e-09 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 2ld5:A 67 54 0.3393 0.2836 0.3519 6.67e-09
28 4rbo:A 55 52 0.4107 0.4182 0.4423 1.09e-08 4rbo:D
29 8osb:E 62 53 0.3929 0.3548 0.4151 1.11e-08
30 3cmy:A 60 54 0.3750 0.3500 0.3889 1.72e-08
31 1nk2:P 77 53 0.3929 0.2857 0.4151 2.32e-08 1nk3:P
32 6e8c:A 135 54 0.4107 0.1704 0.4259 2.41e-08 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 49 0.2500 0.1037 0.2857 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 8ejo:A 56 54 0.3571 0.3571 0.3704 1.59e-07 8ejo:B, 8ejp:A, 8ejp:B
35 8ik5:C 67 56 0.3571 0.2985 0.3571 2.83e-07 8ike:C, 8ilw:C
36 5zjr:A 64 56 0.3929 0.3438 0.3929 5.23e-07 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
37 9b8u:B 66 50 0.2857 0.2424 0.3200 9.71e-05 9b8u:A, 9b8u:C, 9b8u:D
38 4egc:A 539 50 0.2857 0.0297 0.3200 0.003
39 1le8:A 53 53 0.2321 0.2453 0.2453 0.005 1akh:A, 1yrn:A
40 3d1n:I 150 53 0.2500 0.0933 0.2642 0.008 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 1lfu:P 82 35 0.2143 0.1463 0.3429 0.038 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
42 1gt0:C 137 54 0.2500 0.1022 0.2593 0.15 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
43 4j19:A 77 68 0.3036 0.2208 0.2500 0.34 4j19:B
44 5wc9:A 136 49 0.2500 0.1029 0.2857 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
45 8g8e:X 140 56 0.2857 0.1143 0.2857 0.40 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 4g0k:A 327 38 0.2500 0.0428 0.3684 0.44 4g0k:B, 4g0l:A, 4g0l:B, 3r3e:A, 3r3e:B
47 3l1p:A 147 25 0.1607 0.0612 0.3600 1.3 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
48 8bx1:A 127 25 0.1607 0.0709 0.3600 1.5
49 2d5v:A 135 50 0.2679 0.1111 0.3000 1.9 2d5v:B, 8t0f:A, 8t11:A
50 1akh:B 78 34 0.2321 0.1667 0.3824 2.7 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
51 8si6:A 1107 27 0.1786 0.0090 0.3704 3.0 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
52 1mnm:C 77 34 0.2321 0.1688 0.3824 3.1 1mnm:D
53 8ui7:A 643 39 0.2679 0.0233 0.3846 3.4 8ui8:A, 8ui9:A, 8uii:A
54 1mwq:A 100 54 0.3214 0.1800 0.3333 4.0
55 8fip:A 338 23 0.1786 0.0296 0.4348 4.5 8fio:A, 8fio:B, 8fip:B
56 8fip:A 338 22 0.1786 0.0296 0.4545 5.4 8fio:A, 8fio:B, 8fip:B
57 7mq8:LH 746 33 0.2143 0.0161 0.3636 4.5 7mq9:LH, 7mqa:LH
58 6fqp:A 67 38 0.2143 0.1791 0.3158 6.5 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
59 5htv:A 424 17 0.1786 0.0236 0.5882 7.7 5htx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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