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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRNVVGICAMDAKARSKPCRNILNRIIAEGEFEAIVFGDNMILDEAVENWPACDYLICFYSSGFPLKKAEKYVELRKPFC
VNDVVFQELLWDRRLVLNILDAIRVSTPQRLICSRDGGPKINKVLEEKLRRKFGIEITEVPTPEVKMLDEDTLSVDGKII
KKPYVEKPVYGEDHNIYIYFPKSVGGGGRKLFRKVANKSSDYDPDLCAPRTEGSFIYEEFMNVDNAEDVKVYTVGPHYSH
AETRKSPVVDGIVRRNPHGKEIRFITNLSEEEKNMASKISIAFEQPVCGFDLLRVSGQSYVIDVNGWSFVKDNNDYYDNA
ARILKQMFHVAE

The query sequence (length=332) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8e1h:A 332 332 1.0000 1.0000 1.0000 0.0 8e1i:A, 8e1j:A, 8e1j:B, 8e1s:A, 8e1s:B, 8e1t:A, 8e1t:B, 8e1v:A
2 3t99:A 327 322 0.4819 0.4893 0.4969 8.46e-102 5bya:A, 5byb:A, 5dgh:A, 5dgi:A, 8g9e:A, 4hn2:A, 6n5c:A, 4nzm:A, 4nzn:A, 4nzo:A, 4q4c:A, 4q4d:A, 3t54:A, 3t7a:A, 3t9a:A, 3t9b:A, 3t9c:A, 3t9d:A, 3t9e:A, 3t9f:A
3 4iwx:A 294 91 0.0633 0.0714 0.2308 0.29 4iwy:A, 5zct:A, 5zct:B, 5zct:C, 5zct:D, 5zct:E, 5zct:F, 5zct:G, 5zct:H, 5zk6:A
4 8tru:A 378 61 0.0542 0.0476 0.2951 0.64
5 9ey8:DA 450 82 0.0723 0.0533 0.2927 1.7 9ey5:A, 9ey6:A, 9ey7:A, 9ey8:AA, 9ey8:BA, 9ey8:CA, 5m8l:A, 5m8l:C, 5m8l:B, 5m8l:D, 5m8m:A, 5m8m:B, 5m8m:C, 5m8m:D, 5m8n:A, 5m8n:C, 5m8n:D, 5m8n:B, 5m8o:B, 5m8o:C, 5m8o:A, 5m8o:D, 5m8p:A, 5m8p:B, 5m8p:C, 5m8p:D, 5m8q:A, 5m8q:C, 5m8q:D, 5m8q:B, 5m8r:A, 5m8r:B, 5m8r:C, 5m8r:D, 5m8s:A, 5m8s:B, 5m8s:D, 5m8s:C, 5m8t:A, 5m8t:B, 5m8t:C, 5m8t:D
6 7qyr:D 293 131 0.0843 0.0956 0.2137 1.7 7qyr:A, 7qyr:B, 7qyr:C, 7qyr:E, 7qyr:F, 7qyr:G, 7qyr:H, 7qys:A, 7qys:B, 7qys:C, 7qys:D, 7qys:E, 7qys:G, 7qys:H, 7qys:J, 7qys:K, 7qys:M, 7qys:O
7 6s20:C 480 46 0.0422 0.0292 0.3043 8.5
8 8j0t:C 534 77 0.0783 0.0487 0.3377 9.1 8j0s:A, 8j0s:B, 8j0s:C, 8j0t:A, 8j0t:B, 8jr0:A, 8jr0:B, 8jr0:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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